Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   BDGL_002631 Genome accession   NC_016603
Coordinates   2823720..2827478 (-) Length   1252 a.a.
NCBI ID   YP_004996899.1    Uniprot ID   F0KFY6
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2818720..2832478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002624 lip 2819459..2820400 (+) 942 YP_004996892.1 lipase -
  BDGL_002625 rplS 2820452..2820820 (-) 369 YP_004996893.1 50S ribosomal protein L19 -
  BDGL_002626 trmD 2821040..2821795 (-) 756 YP_004996894.1 tRNA (guanine-1-)-methyltransferase -
  BDGL_002627 rimM 2821838..2822386 (-) 549 YP_004996895.1 16S rRNA processing protein -
  BDGL_002628 rpsP 2822406..2822657 (-) 252 YP_004996896.1 30S ribosomal protein S16 -
  BDGL_002629 pilE 2822805..2823230 (-) 426 YP_004996897.1 pilin like competence factor Machinery gene
  BDGL_002630 pilY2 2823227..2823709 (-) 483 YP_004996898.1 pilin like competence factor Machinery gene
  BDGL_002631 pilY1 2823720..2827478 (-) 3759 YP_004996899.1 putative competence factor involved in DNA binding and uptake (ComC) Machinery gene
  BDGL_002632 pilX 2827586..2828338 (-) 753 YP_004996900.1 putative type IV fimbrial biogenesis protein Machinery gene
  BDGL_002633 pilW 2828392..2829339 (-) 948 YP_004996901.1 pilin like competence factor Machinery gene
  BDGL_002634 pilV 2829393..2829953 (-) 561 YP_004996902.1 type IV fimbrial biogenesis protein PilV Machinery gene
  BDGL_002635 - 2829978..2830577 (+) 600 YP_004996903.1 hypothetical protein -
  BDGL_002636 ispH 2830590..2831540 (-) 951 YP_004996904.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BDGL_002637 gmk 2831663..2832292 (+) 630 YP_004996905.1 guanylate kinase -

Sequence

Protein


Download         Length: 1252 a.a.        Molecular weight: 134587.36 Da        Isoelectric Point: 6.6505

>NTDB_id=42978 BDGL_002631 YP_004996899.1 2823720..2827478(-) (pilY1) [Acinetobacter pittii PHEA-2]
MQASDLQIYAAPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNAFLASNNPVLNDTRVGLGNFSANGDSRSGQVLV
AAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLMGTTTYSEANYAIRKDSYIRRVRKSDNRTEYSY
CTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTYSYTYYYTTFNYAVANVDSGIPKSKSNDTASNP
NIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSATVMSTALGSTLGANFTCSGGLSNTTADSGW
ACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRTQSDRKSDDNCSPNQTTNAVAAPGYGNGGF
FPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPNPANTYLTWRGNLKKYHVVLSGTN
AGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVPLPIAGQNETRDEEGNITKYYYAVQTKIRNLFT
DVSAVASDGSLTKISTSGTNLLKIPATPPEGTNPFDSVANTASYVLGKFNASTGQDILKAFPISLKLKILNYLGYSTDIS
ATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQSILYGTMEGGLHIVDASTGVEQMAFIPADILND
PVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTKGSGSSVVSKVTAKQMNIYGGMRMGGSSYYGLNVLNPASPKLLFR
VGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNITLSNSCFTNGKAKGNAVYIIDAKTGERLWWTS
DTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLNNNQTKTNSTYSSFGVRVVRLANLATNDATYDS
SNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLTGREGMSPSTALSGRPVNNVYGIIDKDFIKKNL
MSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGTGQNGWYRSLSSMSDGTEKANNSFRIKGGLKAFEEPMAI
TGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGSIDQNKENHSGFETQTGNTCPVGVSECNENVIG
SGIRGIAFVPKRDEPPVTNSCGKLQLSGNESGTGEWQCTSHLVPTRWYERYR

Nucleotide


Download         Length: 3759 bp        

>NTDB_id=42978 BDGL_002631 YP_004996899.1 2823720..2827478(-) (pilY1) [Acinetobacter pittii PHEA-2]
GTGCAGGCGAGTGATTTACAAATTTATGCTGCACCTACAGCTGGTAAAAAAACCATTGTGATGATGTTGGATACATCCGG
AAGTATGACCAATAATAGTTATGGCGAAAACCGTCTGGCTATGCTTAAAAATGGTATGAATGCTTTTTTAGCAAGTAATA
ATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAGTGGGCAGGTTCTAGTG
GCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAAAACAGGCTGTTGCAAA
TTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATGGGTACAACGACCTATT
CAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAGGCGTGTGCGAAAATCTGATAATAGAACGGAATACTCATAT
TGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGTTCTAATAACTATTGGAGTAACTG
GTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTATTCTTATACTTATTACT
ACACCACTTTTAATTATGCTGTAGCAAATGTAGATAGTGGTATCCCAAAATCAAAATCAAATGATACAGCTAGCAATCCC
AATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCTATTTACCAATCTCCTTTACCTGCAGTGGCCAATCGCCAGAG
TTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGGGAGCCGAACAATACGACAAATACGCGTTCTGCAACTGTCATGT
CGACAGCCCTGGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGCTTGTCTAACACGACAGCAGACTCTGGTTGG
GCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAACCCAGCTGGAGTTTCTATTCAAACAGCATTTGT
CGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGTTCGAGAACCCAATCTG
ATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTATGGAAATGGAGGATTT
TTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAACTTAGATAAAGTCCCTTTAGAACC
CTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATATGGTTACTTACGTGCTT
TTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGTTTTATCGGGAACAAAT
GCTGGTGCTTTTGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGGGTACAAAAGATTATTG
GAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGCGGTTCATATGCAAAAGTTCCTTTACCAATTGCTGGAC
AAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAATTCGCAACTTATTTACT
GATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGCTAAAAATTCCAGCTAC
TCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAATTTAATGCATCAACTG
GACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTACTCAACTGATATTAGT
GCTACGACCTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGTGGTAGTATTCACTCTTTACCAGT
ACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGAGAACAATCCATTCTCTATGGAACGA
TGGAAGGCGGTCTGCATATTGTGGATGCTTCAACTGGTGTAGAACAAATGGCTTTCATTCCTGCCGATATATTAAATGAT
CCAGTCGCTTCAAAAGCTTTAGTTGTTGGTCAAAGTGATGCTACCGCACCTGCACACGGTATGGATGGAGCTTGGGTATC
CGATCCTGCATATAGTATTACTACAAAGGGAAGTGGTAGCTCAGTAGTATCAAAAGTAACTGCAAAGCAAATGAATATTT
ATGGTGGCATGCGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACCTAAGCTCCTCTTTAGA
GTAGGAGCAGACCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTTATAACGG
GGTGATTAAACGCGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATTACCTTGAGCAATTCTT
GCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACGCTTATGGTGGACTAGT
GATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCTTAGATCGAGATGCTGA
TGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAATAATAACCAGACAAAAA
CAAATTCAACTTATAGCAGTTTCGGGGTTCGAGTTGTTCGATTAGCCAATTTGGCAACGAATGATGCTACTTATGATAGC
TCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCCACAGTGACAATTCACGATTATGGAATCCGCAC
TTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACAGGTCGTGAGGGGATGT
CACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAACGTTTATGGAATTATCGATAAAGACTTTATTAAAAAGAATTTA
ATGTCTTTAACAGATAGCCAGCTTGAAACGAAAGATATTACTCGATCGACGCTTCGAAAAAATCCACAAATTTTACGATC
TGGAGAAACACGAGTAGCACAGATTTTCTTTCCCAATACGGGGACGGGACAAAATGGTTGGTATCGTTCACTTTCTAGTA
TGAGCGATGGTACCGAGAAAGCTAATAATAGCTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGAAGAGCCTATGGCAATT
ACAGGGACTTTAATTGTGCCTGTTTATGATCCGCAGGGAACAGGCATTGTAGCTGCAGACCCATGTTTACCACGTGTAGT
AGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCAATCGATCAAAATAAAG
AGAATCACAGTGGGTTTGAAACACAAACGGGGAATACCTGCCCAGTAGGAGTTTCTGAATGTAATGAAAATGTTATTGGC
TCCGGTATTCGTGGCATAGCATTTGTTCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTGGGAAATTACAACTGTC
TGGAAACGAGAGTGGAACGGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACACGCTGGTATGAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(682-933)

von Willebrand factor type A domain (VWA_2)

(19-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KFY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.658

100

0.851

Multiple sequence alignment