Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VFU_RS15215 | Genome accession | NC_016602 |
| Coordinates | 3254724..3255257 (-) | Length | 177 a.a. |
| NCBI ID | WP_014205867.1 | Uniprot ID | A0A0Q2XSJ5 |
| Organism | Vibrio furnissii NCTC 11218 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3249724..3260257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VFU_RS15195 (vfu_A03116) | - | 3250187..3250498 (-) | 312 | WP_014205863.1 | hypothetical protein | - |
| VFU_RS15200 (vfu_A03117) | gspM | 3250491..3251141 (-) | 651 | WP_014205864.1 | type II secretion system protein GspM | - |
| VFU_RS15205 (vfu_A03118) | - | 3251141..3252586 (-) | 1446 | WP_014205865.1 | MSHA biogenesis protein MshI | - |
| VFU_RS15210 (vfu_A03119) | csrD | 3252594..3254588 (-) | 1995 | WP_049781822.1 | RNase E specificity factor CsrD | - |
| VFU_RS15215 (vfu_A03120) | ssb | 3254724..3255257 (-) | 534 | WP_014205867.1 | single-stranded DNA-binding protein | Machinery gene |
| VFU_RS15220 (vfu_A03121) | qstR | 3255540..3256190 (+) | 651 | WP_014205868.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VFU_RS15225 (vfu_A03122) | galU | 3256320..3257189 (+) | 870 | WP_004724089.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VFU_RS15230 (vfu_A03123) | uvrA | 3257327..3260149 (+) | 2823 | WP_014205869.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19671.81 Da Isoelectric Point: 5.7626
>NTDB_id=42959 VFU_RS15215 WP_014205867.1 3254724..3255257(-) (ssb) [Vibrio furnissii NCTC 11218]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=42959 VFU_RS15215 WP_014205867.1 3254724..3255257(-) (ssb) [Vibrio furnissii NCTC 11218]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGCATGCCAGCACAGGGTGGCGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAACCTCAGCAACCTGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGCATGCCAGCACAGGGTGGCGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAACCTCAGCAACCTGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
90.503 |
100 |
0.915 |
| ssb | Glaesserella parasuis strain SC1401 |
54.098 |
100 |
0.559 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.48 |