Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | VFU_RS15220 | Genome accession | NC_016602 |
| Coordinates | 3255540..3256190 (+) | Length | 216 a.a. |
| NCBI ID | WP_014205868.1 | Uniprot ID | - |
| Organism | Vibrio furnissii NCTC 11218 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3250540..3261190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VFU_RS15205 (vfu_A03118) | - | 3251141..3252586 (-) | 1446 | WP_014205865.1 | MSHA biogenesis protein MshI | - |
| VFU_RS15210 (vfu_A03119) | csrD | 3252594..3254588 (-) | 1995 | WP_049781822.1 | RNase E specificity factor CsrD | - |
| VFU_RS15215 (vfu_A03120) | ssb | 3254724..3255257 (-) | 534 | WP_014205867.1 | single-stranded DNA-binding protein | Machinery gene |
| VFU_RS15220 (vfu_A03121) | qstR | 3255540..3256190 (+) | 651 | WP_014205868.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VFU_RS15225 (vfu_A03122) | galU | 3256320..3257189 (+) | 870 | WP_004724089.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VFU_RS15230 (vfu_A03123) | uvrA | 3257327..3260149 (+) | 2823 | WP_014205869.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24779.49 Da Isoelectric Point: 8.7565
>NTDB_id=42960 VFU_RS15220 WP_014205868.1 3255540..3256190(+) (qstR) [Vibrio furnissii NCTC 11218]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS
Nucleotide
Download Length: 651 bp
>NTDB_id=42960 VFU_RS15220 WP_014205868.1 3255540..3256190(+) (qstR) [Vibrio furnissii NCTC 11218]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAGGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTATTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGTGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAGGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTATTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGTGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
70.968 |
100 |
0.713 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
50.224 |
100 |
0.519 |
| qstR | Vibrio campbellii strain DS40M4 |
51.389 |
100 |
0.514 |