Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VFU_RS01515 Genome accession   NC_016602
Coordinates   313886..315409 (-) Length   507 a.a.
NCBI ID   WP_004728753.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 308886..320409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS01490 (vfu_A00281) - 309238..309504 (+) 267 WP_004728762.1 YihD family protein -
  VFU_RS01495 (vfu_A00282) ccoG 309764..311188 (+) 1425 WP_004728760.1 cytochrome c oxidase accessory protein CcoG -
  VFU_RS01500 (vfu_A00283) - 311233..312219 (+) 987 WP_014204157.1 serine/threonine protein kinase -
  VFU_RS01505 (vfu_A00284) - 312250..312849 (+) 600 WP_004728756.1 thiol:disulfide interchange protein DsbA/DsbL -
  VFU_RS01510 (vfu_A00285) - 312889..313782 (-) 894 WP_014204158.1 acyltransferase -
  VFU_RS01515 (vfu_A00286) comM 313886..315409 (-) 1524 WP_004728753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VFU_RS01520 (vfu_A00288) ilvG 315890..317536 (+) 1647 WP_041942455.1 acetolactate synthase 2 catalytic subunit -
  VFU_RS01525 (vfu_A00289) ilvM 317548..317832 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  VFU_RS01530 (vfu_A00290) ilvE 317844..318785 (+) 942 WP_014204161.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54910.84 Da        Isoelectric Point: 7.9331

>NTDB_id=42923 VFU_RS01515 WP_004728753.1 313886..315409(-) (comM) [Vibrio furnissii NCTC 11218]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIALPKLSDHEFIGELALSGEIRSVKGVLPAALAANQAQRSLVVPHHNGDQAALVGQEQHKSARTL
LEVCADLCGQQTLSLFQSDAHAASAPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLHSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=42923 VFU_RS01515 WP_004728753.1 313886..315409(-) (comM) [Vibrio furnissii NCTC 11218]
ATGGGACTCGCAATTATTCACAGCCGCGCCAGCATTGGGGTACAGGCGCCGGCTGTGACGGTGGAAGTGCACATCAGCAA
CGGCATGCCGGGGTTTACGTTGGTCGGTTTGCCCGAGACCACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAACTCCAAATTTGAATTTCCCGCCAAACGCATCACGGTGAATTTAGCCCCCGCCGATCTGCCTAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGTATTTTGGCCGCTTCGGATCAGATAGCGCTGCCCAAACTGAGCGATCATGAGTTCAT
TGGGGAATTGGCACTGTCGGGGGAAATTCGCAGCGTCAAAGGCGTGCTGCCTGCAGCGCTGGCTGCCAATCAAGCGCAGC
GCAGTTTGGTGGTGCCTCATCACAATGGCGATCAAGCTGCGCTGGTGGGGCAGGAGCAACATAAATCGGCGCGCACGTTA
CTTGAAGTGTGCGCTGACTTGTGCGGCCAGCAGACGTTGTCGCTGTTTCAAAGTGACGCGCACGCCGCTAGCGCGCCGCG
CGAGCGCGATTTGCAGGACATCATTGGTCAGCAGCAGGGGAAGCGCGCGTTGGAAATCGCGGCGGCAGGCAATCACAATT
TGTTGTTTCTCGGCCCGCCGGGCACGGGCAAAACCATGTTGGCCTCGCGGTTGTGCGATCTGCTGCCGGAGATGACCGAA
GCCGAGGCGATGGAAACTGCGTCAGTGGCCTCGTTGACGCAACAAGAAATCAATCAGCACAACTGGAAACAGCGCCCGTT
TCGCGCGCCGCATCATTCCAGTTCCATGGCTGCACTGGTGGGCGGCGGTTCGATTCCTCGCCCCGGAGAAATTTCGCTCG
CCCATAATGGGTTGCTGTTTTTAGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCGCTGCGCGAACCATTGGAA
TCGGGCGAGATCATTATCTCGCGTGCGCAGGGCAAAACTCGTTTCCCAGCACGGTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTGCGTTACTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCATTGCCCAAAGGCACTTTGTCACACGGCGGCGATCGC
GGTGAGCCGACGGCAGTGGTGCAGGCGCGGGTCTTTCGCGCGCGTGAAACTATGTTGGCGCGCAGTGGGAAAGTCAATGC
GCTGCTCCACAGTCGTGAAATTGAAACTTACTGTCCGCTCAGCCAGCCGGATGCGGAGTTTCTGGAAAATGCACTGCATC
GCTTGGGGTTATCGATTCGCGCCTATCATCGCATCATCAAGGTGGCACGCACCATCGCCGATCTCAGTGGCGAAGCACAC
ATTCAGCGTGCGCATCTGGCCGAAGCGCTCGGTTATCGCGCCATGGACCGGTTACTCAAGCAGCTGACCGCCCAGTCCGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

88.757

100

0.888
  comM Vibrio campbellii strain DS40M4

85.404

100

0.854
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.432

Multiple sequence alignment