Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HAP28_RS25040 Genome accession   NZ_CP050009
Coordinates   5182813..5184333 (+) Length   506 a.a.
NCBI ID   WP_109739685.1    Uniprot ID   -
Organism   Citrobacter sp. Y3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5177813..5189333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP28_RS25020 (HAP28_25020) ilvE 5179368..5180297 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  HAP28_RS25025 (HAP28_25025) ilvM 5180316..5180579 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  HAP28_RS25030 (HAP28_25030) ilvG 5180576..5182222 (-) 1647 WP_109739684.1 acetolactate synthase 2 catalytic subunit -
  HAP28_RS26160 ilvX 5182225..5182275 (-) 51 WP_193762813.1 peptide IlvX -
  HAP28_RS25035 (HAP28_25035) ilvL 5182362..5182460 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HAP28_RS25040 (HAP28_25040) comM 5182813..5184333 (+) 1521 WP_109739685.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HAP28_RS25045 (HAP28_25045) maoP 5184358..5184696 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  HAP28_RS25050 (HAP28_25050) hdfR 5184815..5185648 (+) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55018.85 Da        Isoelectric Point: 7.2053

>NTDB_id=429224 HAP28_RS25040 WP_109739685.1 5182813..5184333(+) (comM) [Citrobacter sp. Y3]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRVGRGIIVAKENEDEVGLIEGEGCLVADHL
QAVCAFLEGKHDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKHRVIAARERQHKRQGKLNAHLQNKEIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=429224 HAP28_RS25040 WP_109739685.1 5182813..5184333(+) (comM) [Citrobacter sp. Y3]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
AGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTAC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTGTTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACCAGCGTGCAAAAATTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGTACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACATCGGGTCATTGCTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCGCA
CTTGCAAAACAAGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCATCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGACTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60

99.802

0.599
  comM Haemophilus influenzae Rd KW20

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.416

99.802

0.583
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429