Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | D7S_RS02915 | Genome accession | NC_017846 |
| Coordinates | 621806..622819 (-) | Length | 337 a.a. |
| NCBI ID | WP_005545577.1 | Uniprot ID | A0A142G245 |
| Organism | Aggregatibacter actinomycetemcomitans D7S-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 616806..627819
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7S_RS02885 (D7S_00628) | ybgC | 617351..617755 (-) | 405 | WP_005542293.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| D7S_RS02890 (D7S_02765) | ybgE | 617871..618158 (-) | 288 | WP_005542294.1 | cyd operon protein YbgE | - |
| D7S_RS02895 | - | 618163..618261 (-) | 99 | WP_019518193.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| D7S_RS02900 (D7S_00629) | cydB | 618273..619409 (-) | 1137 | WP_005542295.1 | cytochrome d ubiquinol oxidase subunit II | - |
| D7S_RS02905 (D7S_00630) | - | 619424..620989 (-) | 1566 | WP_005549162.1 | cytochrome ubiquinol oxidase subunit I | - |
| D7S_RS02910 (D7S_00631) | - | 621441..621752 (+) | 312 | WP_005542297.1 | DUF5339 domain-containing protein | - |
| D7S_RS02915 (D7S_00632) | ruvB | 621806..622819 (-) | 1014 | WP_005545577.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| D7S_RS02920 (D7S_00633) | ruvA | 622834..623448 (-) | 615 | WP_005542299.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| D7S_RS02925 (D7S_00634) | ruvC | 623512..624084 (-) | 573 | WP_005542300.1 | crossover junction endodeoxyribonuclease RuvC | - |
| D7S_RS02930 (D7S_00635) | - | 624140..624550 (-) | 411 | WP_005542301.1 | hypothetical protein | - |
| D7S_RS02935 (D7S_00636) | - | 624562..625302 (-) | 741 | WP_005542303.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| D7S_RS02940 (D7S_00637) | nudB | 625336..625782 (-) | 447 | WP_005595346.1 | dihydroneopterin triphosphate diphosphatase | - |
| D7S_RS02945 (D7S_00638) | - | 625888..627156 (-) | 1269 | WP_005542307.1 | NRAMP family divalent metal transporter | - |
| D7S_RS02950 (D7S_02775) | - | 627430..627805 (+) | 376 | Protein_560 | transposase | - |
Sequence
Protein
Download Length: 337 a.a. Molecular weight: 37378.90 Da Isoelectric Point: 4.7954
>NTDB_id=42877 D7S_RS02915 WP_005545577.1 621806..622819(-) (ruvB) [Aggregatibacter actinomycetemcomitans D7S-1]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
Nucleotide
Download Length: 1014 bp
>NTDB_id=42877 D7S_RS02915 WP_005545577.1 621806..622819(-) (ruvB) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCAGGCTTAGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGACCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTTGAACCCCA
TGATGTATTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCCATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACGGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGATGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATATTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTCGGTATTGAGAAAATTACTCGCGAAGATTAA
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCAGGCTTAGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGACCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTTGAACCCCA
TGATGTATTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCCATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACGGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGATGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATATTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTCGGTATTGAGAAAATTACTCGCGAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.774 |
97.033 |
0.599 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
58.282 |
96.736 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
55.987 |
91.691 |
0.513 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
91.691 |
0.504 |