Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   D7S_RS02920 Genome accession   NC_017846
Coordinates   622834..623448 (-) Length   204 a.a.
NCBI ID   WP_005542299.1    Uniprot ID   A0A142G244
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 617834..628448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS02890 (D7S_02765) ybgE 617871..618158 (-) 288 WP_005542294.1 cyd operon protein YbgE -
  D7S_RS02895 - 618163..618261 (-) 99 WP_019518193.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  D7S_RS02900 (D7S_00629) cydB 618273..619409 (-) 1137 WP_005542295.1 cytochrome d ubiquinol oxidase subunit II -
  D7S_RS02905 (D7S_00630) - 619424..620989 (-) 1566 WP_005549162.1 cytochrome ubiquinol oxidase subunit I -
  D7S_RS02910 (D7S_00631) - 621441..621752 (+) 312 WP_005542297.1 DUF5339 domain-containing protein -
  D7S_RS02915 (D7S_00632) ruvB 621806..622819 (-) 1014 WP_005545577.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  D7S_RS02920 (D7S_00633) ruvA 622834..623448 (-) 615 WP_005542299.1 Holliday junction branch migration protein RuvA Machinery gene
  D7S_RS02925 (D7S_00634) ruvC 623512..624084 (-) 573 WP_005542300.1 crossover junction endodeoxyribonuclease RuvC -
  D7S_RS02930 (D7S_00635) - 624140..624550 (-) 411 WP_005542301.1 hypothetical protein -
  D7S_RS02935 (D7S_00636) - 624562..625302 (-) 741 WP_005542303.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D7S_RS02940 (D7S_00637) nudB 625336..625782 (-) 447 WP_005595346.1 dihydroneopterin triphosphate diphosphatase -
  D7S_RS02945 (D7S_00638) - 625888..627156 (-) 1269 WP_005542307.1 NRAMP family divalent metal transporter -
  D7S_RS02950 (D7S_02775) - 627430..627805 (+) 376 Protein_560 transposase -
  D7S_RS11570 - 627847..628104 (+) 258 WP_145916689.1 IS3 family transposase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22687.61 Da        Isoelectric Point: 7.4011

>NTDB_id=42878 D7S_RS02920 WP_005542299.1 622834..623448(-) (ruvA) [Aggregatibacter actinomycetemcomitans D7S-1]
MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLLFGFAQKADRTLFRELIKTNG
VGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKTAERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEP
SNEAVAALVALGYKPLDAEKMVKKVSKPELSSEQIIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=42878 D7S_RS02920 WP_005542299.1 622834..623448(-) (ruvA) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGATTGGTCATCTCACTGGTATTTTAATGGAAAAACAGCCGCCGGAAATTTTGTTGGATGTGCAAGGTATCGGCTATGA
ACTACTGCTGCCGATGACAAGTTTTTATAACTTGCCGGAAGTAGGCAAACAAACCCGTTTATTTACTCATCTGGTGGTAC
GTGAGGATGCCCATTTGTTGTTTGGATTTGCCCAAAAAGCCGACCGCACTTTATTCCGCGAACTGATAAAAACCAATGGT
GTCGGGCCCAAATTGGCGCTGGCGATTTTGTCTGCCATGTCGGTAGATGAATTTGCTTATGCTATTGAACGCGAGGAACT
CTCCCGTTTGGTAAAAATTCCCGGTATCGGCAAGAAAACCGCCGAACGGTTATTGGTGGAGTTAAAAGGCAAATTTAAAG
AAGTAAAAACAAACGACTTCTTCGTGCAGGCGGATCATTTACCTCGTTTTAGTACGGAAATATCGGCGACGGTTGAACCG
TCCAACGAAGCGGTAGCGGCGCTCGTGGCATTAGGTTATAAACCGTTAGACGCGGAAAAAATGGTGAAGAAAGTTTCCAA
ACCTGAACTTTCCAGCGAACAGATCATTCGTGAAGCTCTGAAAGCGGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G244

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.407

100

0.363

Multiple sequence alignment