Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G8A07_RS02760 Genome accession   NZ_CP049919
Coordinates   584405..585922 (-) Length   505 a.a.
NCBI ID   WP_195795605.1    Uniprot ID   A0A7S9C434
Organism   Roseateles sp. DAIF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 579405..590922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8A07_RS02730 (G8A07_02730) - 579529..579951 (+) 423 WP_195795599.1 hypothetical protein -
  G8A07_RS02735 (G8A07_02735) - 579984..580763 (-) 780 WP_195795600.1 LamB/YcsF family protein -
  G8A07_RS02740 (G8A07_02740) - 580760..581734 (-) 975 WP_195795601.1 biotin-dependent carboxyltransferase family protein -
  G8A07_RS02745 (G8A07_02745) pxpB 581731..582480 (-) 750 WP_195795602.1 5-oxoprolinase subunit PxpB -
  G8A07_RS02750 (G8A07_02750) - 582648..583322 (-) 675 WP_195795603.1 SH3 domain-containing protein -
  G8A07_RS02755 (G8A07_02755) - 583300..584304 (-) 1005 WP_195795604.1 hypothetical protein -
  G8A07_RS02760 (G8A07_02760) comM 584405..585922 (-) 1518 WP_195795605.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G8A07_RS02765 (G8A07_02765) - 586218..586970 (+) 753 WP_249937202.1 TorF family putative porin -
  G8A07_RS02770 (G8A07_02770) glnK 586992..587330 (+) 339 WP_195795606.1 P-II family nitrogen regulator -
  G8A07_RS02775 (G8A07_02775) amt 587375..588907 (+) 1533 WP_195795607.1 ammonium transporter -
  G8A07_RS02780 (G8A07_02780) - 589173..589901 (-) 729 WP_195795608.1 AAA family ATPase -
  G8A07_RS02785 (G8A07_02785) - 589933..590307 (-) 375 WP_195795609.1 response regulator -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 52610.90 Da        Isoelectric Point: 8.2797

>NTDB_id=428678 G8A07_RS02760 WP_195795605.1 584405..585922(-) (comM) [Roseateles sp. DAIF2]
MSLAVIHSRALDGLAAAPVSVEVHLANGLPSFTLVGLAETEVKEARERVRAALQNSGLSFPHNKRITISLAPADLPKEGG
RFDLPIALGLLAASGQIDAERLAGLECAGELSLAGELRPIRGALAMGLALRQTGGARRLVLPLASAAEAALVRGVPVYGA
GHLLDLVAALAPGSEQALTPASPEAAPAPPNAALDLRDIKGQAAPKRALEIAAAGELSLLLMGPPGTGKSMLAQRLPALL
PPLSEDEALESAAVLSLAGEFTPAAWGRRVFRSPHHSASSVALVGGGSPPRPGEISLAQHGVLFLDEIPEYPRAALEALR
EPMENGRILIARAARRVEFPARFQLIAAMNPCPCGFLGHPGRECRCTPDQVARYQGRLSGPFLDRLDLLVEVPVLPPQTL
AAAPDGEPSAAVAARVAKARGLALARQGCSNARLLPAALEQHVRAEPAANTLLQKTAAHLGWSGRGYHRVLRIARTIADL
ADVPMIAAEHMAEAVQLRRGLQLGG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=428678 G8A07_RS02760 WP_195795605.1 584405..585922(-) (comM) [Roseateles sp. DAIF2]
ATGTCCCTGGCCGTGATACACAGCCGTGCGCTCGACGGGCTGGCCGCCGCGCCGGTCAGCGTCGAGGTGCATCTGGCCAA
TGGCCTGCCCAGCTTCACCCTGGTGGGGCTGGCCGAGACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCGCAGCGCTGC
AGAACAGCGGCCTCTCCTTCCCGCACAACAAACGCATCACGATCAGCCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGG
CGCTTCGACCTGCCGATCGCGCTGGGCCTGCTGGCCGCCAGCGGTCAGATCGATGCCGAACGCCTGGCCGGGCTGGAATG
CGCCGGCGAGCTGTCGCTGGCCGGCGAGCTGCGGCCGATCCGCGGCGCGCTGGCGATGGGCCTGGCGCTGCGCCAGACCG
GCGGCGCCCGCCGCCTGGTGCTGCCGCTGGCCAGCGCCGCCGAGGCCGCGCTGGTGCGCGGCGTGCCGGTCTATGGCGCC
GGCCATCTGCTGGACCTCGTCGCCGCGCTGGCGCCCGGCAGCGAGCAGGCGCTCACACCGGCGAGTCCGGAGGCAGCACC
GGCGCCGCCGAACGCCGCGCTCGATCTGCGCGACATCAAGGGCCAGGCCGCGCCGAAGCGCGCGCTCGAGATCGCCGCCG
CCGGCGAGCTGAGCCTCTTGCTGATGGGTCCGCCGGGCACCGGCAAGTCGATGCTGGCGCAGCGCCTGCCGGCCCTGCTG
CCGCCGCTGAGCGAGGACGAGGCGCTGGAGTCCGCCGCGGTGCTGAGCCTGGCCGGCGAGTTCACGCCCGCCGCCTGGGG
CCGGCGCGTCTTCCGGTCCCCGCACCACAGCGCCTCCAGCGTCGCCCTGGTCGGCGGTGGCTCGCCGCCGCGGCCGGGCG
AGATCTCGCTGGCCCAGCATGGCGTTTTGTTCCTCGACGAGATCCCCGAGTACCCACGGGCCGCGCTGGAGGCCCTGCGC
GAGCCGATGGAGAACGGCCGCATCCTGATCGCCCGTGCCGCGCGGCGGGTCGAGTTCCCGGCGCGCTTCCAGCTGATCGC
GGCCATGAACCCATGTCCTTGCGGATTCTTAGGCCATCCGGGGCGCGAATGCCGCTGCACGCCGGACCAGGTCGCGCGCT
ACCAGGGCCGGCTCAGCGGCCCCTTCCTGGACCGGCTGGACCTGCTGGTCGAGGTGCCGGTGCTGCCGCCGCAGACCCTG
GCCGCCGCGCCGGACGGCGAGCCCAGCGCCGCGGTGGCCGCAAGAGTCGCCAAGGCGCGCGGGCTGGCGCTGGCGCGGCA
GGGCTGCAGCAATGCGCGGCTGCTGCCGGCCGCATTGGAACAACATGTCCGGGCCGAACCGGCCGCCAACACGCTGCTGC
AGAAGACGGCCGCGCATCTGGGCTGGTCCGGACGCGGCTACCACCGGGTGCTGCGGATTGCGCGCACCATCGCCGATCTG
GCCGACGTCCCCATGATCGCGGCCGAGCATATGGCGGAAGCGGTCCAACTGCGCCGGGGCTTGCAGCTGGGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9C434

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.096

99.208

0.517
  comM Vibrio campbellii strain DS40M4

51.4

99.01

0.509
  comM Glaesserella parasuis strain SC1401

50.996

99.406

0.507
  comM Haemophilus influenzae Rd KW20

50.497

99.604

0.503
  comM Legionella pneumophila str. Paris

47.337

100

0.475
  comM Legionella pneumophila strain ERS1305867

47.337

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.792

100

0.408