Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7083_RS06020 Genome accession   NZ_CP049913
Coordinates   1240836..1242359 (-) Length   507 a.a.
NCBI ID   WP_166013980.1    Uniprot ID   A0A6G8D4A3
Organism   Vibrio sp. HDW18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1235836..1247359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS06000 (G7083_06000) - 1237069..1237335 (+) 267 WP_166013977.1 DUF1040 family protein -
  G7083_RS06005 (G7083_06005) ccoG 1237637..1239058 (+) 1422 WP_166013978.1 cytochrome c oxidase accessory protein CcoG -
  G7083_RS06010 (G7083_06010) - 1239106..1240092 (+) 987 WP_166015000.1 serine/threonine protein kinase -
  G7083_RS06015 (G7083_06015) - 1240138..1240743 (+) 606 WP_166013979.1 thiol:disulfide interchange protein DsbA/DsbL -
  G7083_RS06020 (G7083_06020) comM 1240836..1242359 (-) 1524 WP_166013980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G7083_RS06025 (G7083_06025) ilvG 1243011..1244657 (+) 1647 WP_166015001.1 acetolactate synthase 2 catalytic subunit -
  G7083_RS06030 (G7083_06030) ilvM 1244669..1244953 (+) 285 WP_166013981.1 acetolactate synthase 2 small subunit -
  G7083_RS06035 (G7083_06035) ilvE 1244965..1245902 (+) 938 Protein_1115 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55056.33 Da        Isoelectric Point: 10.0015

>NTDB_id=428599 G7083_RS06020 WP_166013980.1 1240836..1242359(-) (comM) [Vibrio sp. HDW18]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASEQIARTKLESYEFIGELALSGKIRRVKGVLPAALAANQVRRSLVVPHANGDQAALVTGAAHKSAHSL
LEVCADLCGQQNLSLFQSAPSEQPLPSSRDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPPMSD
QEAIETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYQGSQARANSQTILRYLSRLSGPLLDRFDMSIEIPALPKGTLAHGGDR
GESTAMVRQRVMAARERMLDRAGKVNALLQSREIDRDCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEKQ
ITRAHLAEALGYRSMDRLLRQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=428599 G7083_RS06020 WP_166013980.1 1240836..1242359(-) (comM) [Vibrio sp. HDW18]
ATGGGACTTGCGATTATTCACAGTCGGGCCAGTATTGGTGTGCAGGCTCCTCCGGTCACGGTTGAGGTGCACATCAGTAA
CGGAATGCCCGGTTTCACATTAGTCGGTCTGCCAGAAACCACCGTTAAAGAATCACGCGATCGGGTGCGCAGCGCGATTA
TTAATTCCCGCTTTGAGTTTCCAGCCAAAAGAATAACCGTCAATTTAGCGCCAGCGGATCTGCCTAAGGAAGGAGGGCGA
TTTGATTTGCCGATCGCGCTGGGCATTTTGGTCGCTTCAGAGCAAATTGCACGAACTAAGCTGGAAAGTTACGAATTTAT
TGGTGAACTGGCGCTATCGGGGAAGATTCGTCGCGTAAAAGGGGTGTTGCCTGCCGCCTTGGCGGCCAACCAAGTGCGGC
GTAGCCTAGTAGTGCCGCATGCCAATGGCGATCAAGCGGCGTTGGTTACGGGTGCAGCGCATAAATCAGCGCACAGTTTG
CTTGAAGTGTGTGCCGATCTGTGTGGCCAACAGAATTTGTCGCTGTTTCAAAGTGCGCCGAGTGAGCAGCCACTGCCAAG
CAGCCGTGATTTACAAGATATTATTGGTCAGCAGCAGGGAAAACGCGCGTTAGAAATTGCCGCCGCTGGCAGCCATAATT
TGCTGTTTTTAGGTCCTCCCGGCACCGGAAAAACCATGTTGGCGTCACGTTTGTGTGATTTATTGCCGCCCATGAGTGAT
CAAGAAGCGATCGAAACCGCCTCAATTGCTTCGCTGACTCAGCAGGAGATTAACCAACACAATTGGAAATTGCGGCCGTT
TCGCGCTCCCCATCACTCCAGTTCCATGGCGGCATTGGTTGGTGGCGGTACGATTCCGCGTCCTGGCGAAATATCGTTAG
CGCATAACGGGCTATTATTTTTGGACGAAATGCCAGAGTTTGAACGCAAGGTGCTCGATTCGCTGCGTGAGCCATTGGAG
TCGGGCGAGATTGTGATTTCTCGTGCGCAAGGTAAAACCCGTTTTCCAGCTCGTTTTCAGTTGGTTGGCGCGTTAAACCC
CAGCCCAACCGGTTATTATCAAGGTAGCCAAGCGCGGGCCAATTCACAGACGATCTTGCGCTATTTAAGTCGGCTCTCTG
GCCCGTTGTTGGATCGGTTTGATATGTCGATTGAGATCCCAGCGTTGCCGAAGGGAACGTTGGCTCATGGCGGCGATCGT
GGTGAATCGACCGCGATGGTGCGTCAGCGTGTGATGGCGGCGCGTGAGCGAATGTTAGATCGCGCTGGCAAGGTAAACGC
TTTGCTGCAAAGCCGTGAGATTGATCGTGATTGCCCATTGCTGAAGGCGGATGCTGAGTTTTTGGAGAGTGCCTTGCATC
GACTTGGTTTGTCGATCCGCGCTTACCACCGGATTATCAAGGTGGCACGTACTATTGCTGATTTGCAGGGGGAAAAGCAG
ATCACGCGGGCTCATTTGGCAGAAGCGCTCGGTTATCGCTCGATGGATCGCTTGCTTAGGCAGCTTAGTGCGCAGAATGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D4A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

91.716

100

0.917
  comM Vibrio campbellii strain DS40M4

82.446

100

0.824
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.405

100

0.639
  comM Legionella pneumophila str. Paris

50.501

98.422

0.497
  comM Legionella pneumophila strain ERS1305867

50.501

98.422

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.442