Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7083_RS04485 Genome accession   NZ_CP049913
Coordinates   948758..949291 (-) Length   177 a.a.
NCBI ID   WP_166013768.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 943758..954291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS04465 (G7083_04465) - 944175..944477 (-) 303 WP_166014985.1 MSHA biogenesis protein MshK -
  G7083_RS04470 (G7083_04470) gspM 944485..945135 (-) 651 WP_166013765.1 type II secretion system protein GspM -
  G7083_RS04475 (G7083_04475) - 945132..946607 (-) 1476 WP_166013766.1 MSHA biogenesis protein MshI -
  G7083_RS04480 (G7083_04480) csrD 946621..948633 (-) 2013 WP_166013767.1 RNase E specificity factor CsrD -
  G7083_RS04485 (G7083_04485) ssb 948758..949291 (-) 534 WP_166013768.1 single-stranded DNA-binding protein Machinery gene
  G7083_RS04490 (G7083_04490) qstR 949583..950227 (+) 645 WP_166013769.1 LuxR C-terminal-related transcriptional regulator Regulator
  G7083_RS04495 (G7083_04495) galU 950603..951475 (+) 873 WP_166013770.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19706.93 Da        Isoelectric Point: 5.2257

>NTDB_id=428595 G7083_RS04485 WP_166013768.1 948758..949291(-) (ssb) [Vibrio sp. HDW18]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSESWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYNGIMQMLGGRTQQGGMPAQGGMNPPAQQGNWGQPQQPVKQSQPIQQPAPQQYA
QPQYNEPPIDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=428595 G7083_RS04485 WP_166013768.1 948758..949291(-) (ssb) [Vibrio sp. HDW18]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGTGG
TGGCGCGGTAGCGAATATTACCATTGCGACTTCTGAAAGCTGGCGTGATAAAACGACCGGTGAACAGAAAGAAAAAACTG
AATGGCACCGTGTGACACTGTATGGAAAACTGGCAGAAGTTGCAGGTGAATATTTGCGTAAAGGCTCTCAAGTTTATATT
GAAGGTCAATTGCAAACGCGTAAATGGCAAGATCAGAATGGTCAAGATCGTTACTCTACCGATATCGTGGTGCAAGGCTA
TAACGGGATCATGCAGATGCTTGGTGGCCGTACACAACAAGGCGGTATGCCAGCCCAAGGTGGTATGAATCCTCCTGCGC
AGCAAGGTAACTGGGGGCAACCACAGCAGCCGGTTAAACAGTCTCAGCCGATCCAACAACCTGCGCCACAACAATATGCT
CAGCCGCAATATAATGAGCCCCCGATCGATTTTGATGATGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

92.09

100

0.921
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.548
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486
  ssb Neisseria meningitidis MC58

47.222

100

0.48