Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   G7083_RS04490 Genome accession   NZ_CP049913
Coordinates   949583..950227 (+) Length   214 a.a.
NCBI ID   WP_166013769.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 944583..955227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS04475 (G7083_04475) - 945132..946607 (-) 1476 WP_166013766.1 MSHA biogenesis protein MshI -
  G7083_RS04480 (G7083_04480) csrD 946621..948633 (-) 2013 WP_166013767.1 RNase E specificity factor CsrD -
  G7083_RS04485 (G7083_04485) ssb 948758..949291 (-) 534 WP_166013768.1 single-stranded DNA-binding protein Machinery gene
  G7083_RS04490 (G7083_04490) qstR 949583..950227 (+) 645 WP_166013769.1 LuxR C-terminal-related transcriptional regulator Regulator
  G7083_RS04495 (G7083_04495) galU 950603..951475 (+) 873 WP_166013770.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  G7083_RS04500 (G7083_04500) uvrA 951636..954458 (+) 2823 WP_166013771.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24597.32 Da        Isoelectric Point: 9.8342

>NTDB_id=428596 G7083_RS04490 WP_166013769.1 949583..950227(+) (qstR) [Vibrio sp. HDW18]
MQRANYARTIYLLTPQANDVHPDIQAAITKLDLAVPVIEPPRLLQDFQSDKHKILLLDHRQSGQIRQQLGPLKLTSPYFE
TILFNVAKRLKTDELLTFGNLKGLFYASDETDFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRSLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNIL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=428596 G7083_RS04490 WP_166013769.1 949583..950227(+) (qstR) [Vibrio sp. HDW18]
ATGCAACGAGCCAATTACGCCCGCACTATTTACTTACTCACCCCTCAAGCAAACGATGTACACCCGGATATTCAAGCCGC
CATTACTAAACTAGATTTAGCCGTTCCCGTGATTGAGCCACCACGTTTATTGCAAGACTTTCAATCTGATAAGCATAAAA
TTCTACTGCTTGACCATCGGCAGAGCGGCCAAATTCGCCAGCAACTAGGACCACTGAAACTCACCAGCCCCTACTTTGAA
ACGATTTTATTTAACGTAGCTAAGCGCTTAAAAACTGACGAACTACTAACTTTTGGTAACTTGAAGGGGCTGTTTTATGC
CAGTGATGAAACTGATTTTATCGCCCATGGGCTAGGTGAAATTATCAATGGTCAAAATTGGTTACCGCGCCATGTGAGTA
GTCAATTATTGCACTACTATCGTTATGCATTCCAAACTCATCAAACACAAGCGACCGTCGATCTCACCGCTCGTGAAATT
CAAATTCTGCGCAGCTTACAAACTGGTGCATCCAATATGCAAATTGCTGAAAGTTTATTTATCAGTGAGTTCACGGTTAA
ATCACATTTATATCAAATATTTAAGAAGTTAAATGTCAAAAACCGCGTCAAAGCAATTGCTTGGGTGAACCAAAATATAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

85.514

100

0.855
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.336

100

0.523