Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7047_RS24850 Genome accession   NZ_CP049910
Coordinates   5434976..5436529 (-) Length   517 a.a.
NCBI ID   WP_166311017.1    Uniprot ID   A0A6G8CVS5
Organism   Diaphorobacter sp. HDW4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5429976..5441529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS24830 (G7047_24835) - 5431615..5432385 (+) 771 WP_166311013.1 ABC transporter ATP-binding protein -
  G7047_RS24835 (G7047_24840) - 5432391..5433128 (+) 738 WP_166312252.1 ABC transporter ATP-binding protein -
  G7047_RS24840 (G7047_24845) - 5433142..5433867 (-) 726 WP_205904672.1 PadR family transcriptional regulator -
  G7047_RS24845 (G7047_24850) - 5433988..5434866 (-) 879 WP_166311015.1 SDR family NAD(P)-dependent oxidoreductase -
  G7047_RS24850 (G7047_24855) comM 5434976..5436529 (-) 1554 WP_166311017.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G7047_RS24855 (G7047_24860) - 5436750..5437478 (+) 729 WP_166311019.1 TorF family putative porin -
  G7047_RS24860 (G7047_24865) - 5437540..5437878 (+) 339 WP_166311021.1 P-II family nitrogen regulator -
  G7047_RS24865 (G7047_24870) amt 5437926..5439344 (+) 1419 WP_166311023.1 ammonium transporter -
  G7047_RS24870 (G7047_24875) - 5439716..5440681 (+) 966 WP_166311025.1 SMP-30/gluconolactonase/LRE family protein -
  G7047_RS24875 (G7047_24880) - 5440703..5441212 (+) 510 WP_166311027.1 hypothetical protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 55148.94 Da        Isoelectric Point: 7.5870

>NTDB_id=428576 G7047_RS24850 WP_166311017.1 5434976..5436529(-) (comM) [Diaphorobacter sp. HDW4A]
MSLALVQSRALTGLQAMPVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNSGLEFPGNKKITVNLAPADLPKDSG
RFDLPIAMGILAASGQIDGSRFTGYEFAGELSLSGALRPVRGALATGLAIRAQSSHAPDLRQVLPPGSAEEAALVPDAHI
YRAEHLLDVVQHFLPADAQTRANGEADAPALQLMRPRNTAPQETGPDLADVKGQIAAKRAMEIAAAGMHGMLFVGPPGSG
KSMLAQRFAGLLPPMTLEQALESAAIASLAGRFTPEEWMRRRTSHPHHTCSAVALVGGGSPPRPGEISLAHEGVLFLDEF
PEFTRNALEALREPLETGTITISRAAQRAEFPARFTLVAAMNPCPCGYLGSQQRHCRCSPEQIARYQAKLSGPLLDRIDL
HVEVPALPPEELINAPAGESTAAMRERITQAATRALARQGCANQRLQGRDIDQHAQLDDAAARFLQTAATRLGWSARSTH
RALKVARTIADLAGSDHISAAHIAEAMQYRRGPSAMK

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=428576 G7047_RS24850 WP_166311017.1 5434976..5436529(-) (comM) [Diaphorobacter sp. HDW4A]
ATGAGTCTCGCTTTAGTGCAAAGCCGCGCCCTCACGGGTCTGCAGGCCATGCCGGTCACCGTGGAGGTGCATCTGGCCAA
CGGGCTTCCGAGCTTCACACTGGTGGGTCTGGCCGATGTCGAGGTGAAGGAAGCGCGCGAACGGGTGCGCTCGGCGCTGC
AGAACTCGGGGCTCGAATTTCCGGGCAACAAGAAGATCACCGTGAACCTCGCGCCCGCCGATCTGCCCAAGGATTCGGGA
CGCTTCGATCTGCCGATCGCCATGGGCATTCTCGCGGCCAGTGGGCAGATCGACGGCAGCCGCTTCACGGGCTACGAGTT
CGCGGGCGAGCTGTCGTTGTCGGGCGCATTGCGGCCGGTGCGCGGCGCGCTCGCCACGGGCCTGGCGATCCGCGCGCAAT
CGTCCCACGCGCCCGACCTGCGGCAGGTGCTGCCACCCGGCAGCGCCGAAGAAGCCGCGCTCGTGCCCGATGCACATATC
TACCGTGCGGAGCATCTGCTTGATGTCGTCCAGCACTTTCTGCCCGCCGACGCACAGACGCGTGCCAATGGTGAAGCCGA
CGCCCCCGCGCTGCAGCTCATGCGCCCGCGCAACACCGCACCGCAGGAAACCGGCCCCGACCTCGCCGATGTGAAAGGCC
AGATCGCCGCCAAGCGCGCCATGGAGATCGCCGCCGCCGGGATGCACGGCATGCTGTTCGTCGGCCCTCCGGGATCGGGC
AAGTCCATGCTCGCGCAGCGCTTTGCGGGCCTGCTGCCTCCAATGACGCTTGAGCAGGCGCTGGAGAGCGCCGCCATCGC
CAGCCTCGCGGGTCGCTTCACGCCCGAGGAATGGATGCGGCGGCGCACCAGCCATCCGCACCACACCTGCAGCGCGGTCG
CGCTGGTGGGCGGGGGATCGCCACCCCGGCCCGGTGAAATCTCGCTCGCGCACGAGGGCGTGCTGTTTCTCGACGAGTTT
CCCGAGTTCACCCGCAACGCGCTGGAGGCGCTGCGCGAGCCGCTCGAGACCGGCACCATCACCATCTCGCGCGCGGCGCA
GCGCGCGGAATTCCCAGCTCGATTTACTCTGGTCGCTGCCATGAATCCCTGCCCCTGCGGCTATCTCGGCTCGCAGCAGC
GCCACTGCCGTTGCTCGCCCGAGCAGATCGCGCGCTATCAGGCCAAGCTCAGCGGGCCGCTGCTCGACCGCATCGACCTG
CATGTCGAAGTGCCCGCCCTGCCGCCCGAGGAGCTGATCAACGCCCCCGCAGGCGAGAGCACCGCCGCCATGCGCGAGCG
CATCACGCAGGCGGCCACCCGCGCCCTCGCGCGCCAGGGCTGCGCCAACCAGCGCTTACAAGGGCGCGACATCGACCAGC
ATGCGCAGCTCGACGACGCCGCCGCGCGCTTTCTGCAAACCGCCGCCACGCGGCTCGGCTGGTCGGCGCGCAGCACGCAC
CGCGCGCTGAAAGTGGCACGCACGATTGCCGATCTCGCGGGCAGCGACCATATCAGCGCCGCCCACATCGCCGAGGCCAT
GCAGTACCGGCGCGGGCCCTCCGCCATGAAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-411)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8CVS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.242

99.226

0.518
  comM Haemophilus influenzae Rd KW20

51.55

99.807

0.515
  comM Vibrio campbellii strain DS40M4

50.391

99.033

0.499
  comM Glaesserella parasuis strain SC1401

49.903

99.613

0.497
  comM Legionella pneumophila str. Paris

47.776

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.776

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.231

100

0.445