Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7048_RS10385 Genome accession   NZ_CP049905
Coordinates   2228411..2229958 (+) Length   515 a.a.
NCBI ID   WP_166068068.1    Uniprot ID   A0A6G8BVZ0
Organism   Diaphorobacter sp. HDW4B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2223411..2234958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS10360 (G7048_10355) - 2223446..2223982 (-) 537 WP_166068062.1 hypothetical protein -
  G7048_RS10365 (G7048_10360) - 2224116..2225090 (-) 975 WP_166068064.1 SMP-30/gluconolactonase/LRE family protein -
  G7048_RS10370 (G7048_10365) amt 2225593..2227005 (-) 1413 WP_166068065.1 ammonium transporter -
  G7048_RS10375 (G7048_10370) - 2227060..2227398 (-) 339 WP_166068066.1 P-II family nitrogen regulator -
  G7048_RS10380 (G7048_10375) - 2227460..2228188 (-) 729 WP_166068067.1 TorF family putative porin -
  G7048_RS10385 (G7048_10380) comM 2228411..2229958 (+) 1548 WP_166068068.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G7048_RS10390 (G7048_10385) - 2230015..2231874 (-) 1860 WP_166068069.1 clostripain-related cysteine peptidase -
  G7048_RS10395 (G7048_10390) - 2232116..2232871 (+) 756 WP_205750358.1 PadR family transcriptional regulator -
  G7048_RS10400 (G7048_10395) - 2232902..2233654 (-) 753 WP_371747669.1 ABC transporter ATP-binding protein -
  G7048_RS10405 (G7048_10400) - 2233651..2234424 (-) 774 WP_166068070.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54962.87 Da        Isoelectric Point: 7.5294

>NTDB_id=428549 G7048_RS10385 WP_166068068.1 2228411..2229958(+) (comM) [Diaphorobacter sp. HDW4B]
MSLALVQSRALTGLQAMPVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNSGLVFPANKKIIVNLAPADLPKDSG
RFDLPIAMGILAASGQIDGSRFAGYEFAGELSLSGALRPVRGALATGLAIRSQTDHTPDLKQVLPPTSAEEAALVPDAQI
YRAEHLLDVVQHFLPADAQAAGDGDAPGLQRMRPREITPPENGPDLADVKGQSAAKRAMEIAAAGMHGMLFVGPPGSGKS
MLAQRFAGLLPPMTLEQALESAAIASLAGRFTQQEWMQRRTSHPHHTCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPE
FTRNALEALREPLETGNITISRAALRAEFPARFTLIAAMNPCPCGYLGSQQRHCRCSPEQIARYQAKLSGPLLDRIDLHV
EVPALPPEELINAPAGESTAAMRERITQAASRAFARQGCANQRLQGRDIDQHARLDEAAARFLQAAAGKLGWSARSTHRA
LKVARTIADLAACEQISAAHIAEAMQYRRGLSGMR

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=428549 G7048_RS10385 WP_166068068.1 2228411..2229958(+) (comM) [Diaphorobacter sp. HDW4B]
ATGAGTCTCGCTTTAGTGCAAAGCCGCGCCCTCACGGGTTTGCAGGCCATGCCGGTCACCGTGGAGGTGCATCTGGCCAA
CGGGCTTCCGAGCTTCACGCTGGTGGGCCTGGCGGACGTCGAAGTCAAGGAGGCGCGCGAGCGGGTGCGCTCGGCGCTGC
AGAACTCGGGACTGGTGTTTCCGGCCAACAAGAAGATCATCGTGAACCTTGCGCCCGCCGATCTGCCCAAGGATTCCGGG
CGTTTCGACCTGCCGATCGCCATGGGCATCCTCGCGGCCAGCGGGCAGATCGACGGCAGCCGCTTTGCGGGCTACGAGTT
CGCGGGCGAGTTGTCGCTCTCGGGCGCGCTGCGCCCGGTGCGCGGCGCGCTTGCCACGGGTCTGGCGATTCGCTCGCAGA
CCGACCACACACCCGATCTCAAGCAGGTGCTTCCCCCGACCAGCGCCGAAGAAGCCGCCCTCGTGCCCGATGCACAGATC
TACCGCGCCGAACATCTGCTCGACGTGGTGCAGCACTTTCTGCCAGCCGATGCACAGGCGGCGGGCGATGGCGACGCGCC
GGGCCTGCAACGCATGCGCCCGCGCGAAATCACGCCGCCCGAAAACGGCCCGGATCTTGCCGACGTGAAAGGCCAGAGCG
CCGCCAAGCGCGCGATGGAAATCGCAGCCGCCGGCATGCACGGAATGCTGTTCGTCGGCCCACCGGGCTCCGGCAAGTCC
ATGCTCGCGCAACGCTTTGCAGGCCTGCTGCCGCCGATGACGCTGGAGCAGGCACTGGAGAGCGCCGCCATCGCCAGCCT
TGCCGGTCGCTTCACGCAGCAGGAATGGATGCAGCGCCGCACCAGCCATCCGCACCACACCTGCAGCGCAGTGGCGCTGG
TGGGAGGTGGATCGCCACCAAGGCCCGGCGAAATCTCGCTCGCGCACGAAGGCGTCTTGTTTCTCGACGAGTTTCCGGAG
TTCACTCGCAACGCGCTGGAAGCCCTGCGCGAGCCGCTGGAGACCGGCAACATCACCATCTCGCGCGCCGCGCTGCGTGC
CGAGTTTCCAGCGCGCTTCACTTTGATTGCGGCGATGAATCCCTGCCCCTGCGGCTATCTGGGATCGCAGCAGCGCCATT
GCCGCTGTTCGCCCGAGCAGATCGCGCGCTACCAGGCCAAGCTCAGCGGACCGCTGCTGGACCGCATCGACCTGCATGTC
GAAGTGCCCGCGCTGCCGCCCGAGGAACTGATCAACGCGCCCGCTGGCGAGTCCACCGCCGCCATGCGCGAGCGCATCAC
GCAAGCGGCCAGCCGTGCCTTCGCGCGCCAAGGCTGCGCCAACCAGCGCCTGCAAGGCCGCGACATCGACCAGCACGCGC
GGCTCGACGAAGCTGCAGCGCGCTTTCTTCAAGCCGCCGCAGGCAAGCTGGGCTGGTCGGCGCGCAGCACGCATCGCGCC
TTGAAGGTCGCGCGCACGATTGCCGACTTGGCGGCCTGCGAGCAGATCAGCGCCGCGCACATCGCCGAAGCCATGCAGTA
CCGGCGCGGGCTCTCGGGCATGCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-409)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8BVZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.65

100

0.517
  comM Haemophilus influenzae Rd KW20

50.388

100

0.505
  comM Vibrio campbellii strain DS40M4

50.196

99.029

0.497
  comM Glaesserella parasuis strain SC1401

49.902

99.223

0.495
  comM Legionella pneumophila str. Paris

47.961

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.961

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.269

100

0.437