Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V753_RS16425 Genome accession   NZ_CP049904
Coordinates   3346888..3348273 (-) Length   461 a.a.
NCBI ID   WP_007614104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GB03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3341888..3353273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS16390 (V753_16360) flgL 3342063..3342980 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  V753_RS16395 (V753_16365) flgK 3342992..3344509 (-) 1518 WP_029325804.1 flagellar hook-associated protein FlgK -
  V753_RS16400 (V753_16370) - 3344525..3345007 (-) 483 WP_007614101.1 flagellar protein FlgN -
  V753_RS16405 (V753_16375) flgM 3345022..3345288 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V753_RS16410 (V753_16380) - 3345358..3345777 (-) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  V753_RS16415 (V753_16385) comFC 3345851..3346540 (-) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  V753_RS16420 (V753_16390) - 3346546..3346830 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V753_RS16425 (V753_16395) comFA 3346888..3348273 (-) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  V753_RS16430 (V753_16400) - 3348382..3349230 (-) 849 WP_007614105.1 DegV family protein -
  V753_RS16435 (V753_16405) degU 3349328..3350017 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V753_RS16440 (V753_16410) degS 3350094..3351257 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  V753_RS16445 (V753_16415) - 3351480..3352127 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52536.99 Da        Isoelectric Point: 10.0468

>NTDB_id=428526 V753_RS16425 WP_007614104.1 3346888..3348273(-) (comFA) [Bacillus velezensis strain GB03]
MSEGASEFLEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADEQTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKIEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRTEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=428526 V753_RS16425 WP_007614104.1 3346888..3348273(-) (comFA) [Bacillus velezensis strain GB03]
ATGTCCGAAGGTGCTTCAGAATTTTTAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACAGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGGCAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAATCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTTGTTCCGTCTGTACACGTTTTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGACAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.053

98.048

0.618
  comFA Latilactobacillus sakei subsp. sakei 23K

38.182

95.445

0.364