Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V753_RS16415 Genome accession   NZ_CP049904
Coordinates   3345851..3346540 (-) Length   229 a.a.
NCBI ID   WP_200866785.1    Uniprot ID   -
Organism   Bacillus velezensis strain GB03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340851..3351540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS16380 (V753_16350) fliW 3340941..3341372 (-) 432 WP_007614098.1 flagellar assembly protein FliW -
  V753_RS16385 (V753_16355) - 3341402..3341971 (-) 570 WP_007407476.1 DUF6470 family protein -
  V753_RS16390 (V753_16360) flgL 3342063..3342980 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  V753_RS16395 (V753_16365) flgK 3342992..3344509 (-) 1518 WP_029325804.1 flagellar hook-associated protein FlgK -
  V753_RS16400 (V753_16370) - 3344525..3345007 (-) 483 WP_007614101.1 flagellar protein FlgN -
  V753_RS16405 (V753_16375) flgM 3345022..3345288 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V753_RS16410 (V753_16380) - 3345358..3345777 (-) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  V753_RS16415 (V753_16385) comFC 3345851..3346540 (-) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  V753_RS16420 (V753_16390) - 3346546..3346830 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V753_RS16425 (V753_16395) comFA 3346888..3348273 (-) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  V753_RS16430 (V753_16400) - 3348382..3349230 (-) 849 WP_007614105.1 DegV family protein -
  V753_RS16435 (V753_16405) degU 3349328..3350017 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V753_RS16440 (V753_16410) degS 3350094..3351257 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25213.83 Da        Isoelectric Point: 8.0779

>NTDB_id=428525 V753_RS16415 WP_200866785.1 3345851..3346540(-) (comFC) [Bacillus velezensis strain GB03]
MNCLLCDSPITSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVASFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=428525 V753_RS16415 WP_200866785.1 3345851..3346540(-) (comFC) [Bacillus velezensis strain GB03]
CTGAATTGTTTATTGTGTGACTCACCAATTACAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCGCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59