Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECWSU1_RS01380 Genome accession   NC_016514
Coordinates   296404..296931 (+) Length   175 a.a.
NCBI ID   WP_014168221.1    Uniprot ID   -
Organism   Enterobacter ludwigii     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 291404..301931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECWSU1_RS01360 (EcWSU1_00275) aphA 291727..292440 (+) 714 WP_014168217.1 acid phosphatase AphA -
  ECWSU1_RS01365 (EcWSU1_00277) - 292554..292970 (+) 417 WP_014168218.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECWSU1_RS01370 (EcWSU1_00278) - 292973..293326 (+) 354 WP_014168219.1 MmcQ/YjbR family DNA-binding protein -
  ECWSU1_RS01375 (EcWSU1_00279) uvrA 293330..296152 (-) 2823 WP_014168220.1 excinuclease ABC subunit UvrA -
  ECWSU1_RS01380 (EcWSU1_00280) ssb 296404..296931 (+) 528 WP_014168221.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECWSU1_RS01385 (EcWSU1_00281) - 296995..297276 (-) 282 WP_020882839.1 YjcB family protein -
  ECWSU1_RS01390 (EcWSU1_00282) - 297766..299166 (+) 1401 WP_014168223.1 sensor domain-containing diguanylate cyclase -
  ECWSU1_RS01395 (EcWSU1_00283) - 299506..301071 (+) 1566 WP_025206387.1 EAL domain-containing protein -
  ECWSU1_RS01400 (EcWSU1_00284) soxS 301078..301404 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18735.76 Da        Isoelectric Point: 5.2456

>NTDB_id=42810 ECWSU1_RS01380 WP_014168221.1 296404..296931(+) (ssb) [Enterobacter ludwigii]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=42810 ECWSU1_RS01380 WP_014168221.1 296404..296931(+) (ssb) [Enterobacter ludwigii]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.36

Multiple sequence alignment