Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G8765_RS04600 Genome accession   NZ_CP049828
Coordinates   1041129..1042649 (-) Length   506 a.a.
NCBI ID   WP_176381778.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036129..1047649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8765_RS04590 (G8765_04595) - 1039994..1040338 (-) 345 WP_034749443.1 DUF1840 domain-containing protein -
  G8765_RS04595 (G8765_04600) - 1040519..1041064 (-) 546 WP_034784670.1 hypothetical protein -
  G8765_RS04600 (G8765_04605) comM 1041129..1042649 (-) 1521 WP_176381778.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G8765_RS04605 (G8765_04610) - 1042760..1043008 (-) 249 WP_034749434.1 accessory factor UbiK family protein -
  G8765_RS04610 (G8765_04615) - 1043279..1044046 (+) 768 WP_034784677.1 TorF family putative porin -
  G8765_RS04615 (G8765_04620) - 1044058..1044396 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  G8765_RS04620 (G8765_04625) amt 1044408..1045943 (+) 1536 WP_034784678.1 ammonium transporter -
  G8765_RS04625 (G8765_04630) gshA 1046148..1047446 (+) 1299 WP_070254361.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54594.54 Da        Isoelectric Point: 8.7983

>NTDB_id=428046 G8765_RS04600 WP_176381778.1 1041129..1042649(-) (comM) [Janthinobacterium lividum strain EIF2]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQSGAPRAFILPQANADEAALVGDACIYP
AHSLLEVCAHFAARTSHTALQRHQPVLAAHAFQYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALQSAAVHSLGGHFKVEHWKRRPYRSPHQTASGAALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHNRLSGPLLDRIDLQIEVAAMPPAA
LGRQAGAGECTQRIATRVAAAYALQLARQGKSNQRLSNTEIEQHCRLETHGEQLLHGAMTRLHWSARTYHRVLRVARSIA
DLAGSPAITQPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=428046 G8765_RS04600 WP_176381778.1 1041129..1042649(-) (comM) [Janthinobacterium lividum strain EIF2]
ATGAGCCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
CGGCTTGCCTTCGTTTACGATTGTCGGCTTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGTGTTCGTGCCGCGTTGC
AAAACTGCGGCTTTGAAATGCCGGCCCGGCGCATCACGGCCAATCTGGCACCAGCAGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATTGCACTGGGCATCCTGGCCGCCTCCGGCCAATTGCCGGGCGACCAATTACATCACTATGAATTCGC
GGGCGAACTGTCGCTCTCAGGCCAGTTGCGTCCCATCCGCGGCGCCCTGGCCATGACCTTTGCCATGCAGCGCAGCCAGT
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCGAACGCGGACGAGGCCGCTCTCGTCGGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCGTACCAGCCATACCGCCCTGCAACGCCACCAGCCCGTGCT
GGCAGCGCACGCTTTTCAGTACCCCGACTTTGCCGACGTGCAGGGGCAGCAGCAAGCGCGGCGGGCACTGGAAGTGGCGG
CAGCGGGCGGTCACAACGTCCTGATGGTGGGACCACCGGGCGCAGGCAAGACCATGCTGGCCAGCCGCTTTCCCGGCGTG
CTGCCGCCCATGAGCGATGAAGAAGCGCTGCAATCGGCTGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGGCGGCCCTATCGTTCCCCGCACCAGACAGCATCCGGCGCGGCACTGGTGGGTGGCGGCAACGTGCCGCGCCCGG
GAGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGATGAAATTGCCGAATTCCAGCGGCGGGTACTCGATGTGCTG
CGCCAGCCCATGGAGTCGGGCGTGATCAGCATTTCACGCGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTTCAACTGAT
CGCCGCCATGAATCCCTGCCCATGCGGCTACCTGGGCCACGCTTCCGGCCGCTGCCGCTGTACGCCAGACGCCGTGCTGC
GCTATCACAATCGCCTGTCCGGCCCACTGCTCGACCGTATCGACCTGCAGATTGAAGTGGCCGCCATGCCGCCGGCCGCG
CTGGGCCGGCAGGCCGGTGCCGGAGAATGCACGCAGCGGATCGCCACGCGGGTAGCGGCAGCCTATGCCTTGCAGCTGGC
GCGCCAGGGAAAATCAAACCAGCGGCTGAGCAACACGGAAATCGAGCAGCATTGTCGCCTTGAAACGCATGGCGAACAGT
TGCTGCATGGCGCCATGACGCGCCTGCACTGGTCCGCGCGCACCTATCACCGGGTACTGCGCGTGGCGCGCAGCATCGCG
GACCTGGCGGGCAGCCCGGCCATCACGCAGCCGCATGTTGCCGAAGCGATCCAGTACCGGCGCGTACTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.012

100

0.545
  comM Vibrio cholerae strain A1552

52.941

100

0.534
  comM Glaesserella parasuis strain SC1401

52.86

100

0.53
  comM Haemophilus influenzae Rd KW20

50.392

100

0.508
  comM Legionella pneumophila str. Paris

48.141

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.141

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.443