Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   G4D76_RS01150 Genome accession   NZ_CP049818
Coordinates   206116..206439 (+) Length   107 a.a.
NCBI ID   WP_213810307.1    Uniprot ID   -
Organism   Jeotgalicoccus sp. WY2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201116..211439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D76_RS01120 argH 201196..202564 (+) 1369 Protein_247 argininosuccinate lyase -
  G4D76_RS01125 - 202622..202858 (-) 237 WP_026858146.1 DUF2759 domain-containing protein -
  G4D76_RS01130 - 202957..203568 (+) 612 WP_213810305.1 MBL fold metallo-hydrolase -
  G4D76_RS01135 - 203621..203869 (-) 249 WP_213810306.1 DUF2626 family protein -
  G4D76_RS01140 - 204086..205085 (+) 1000 Protein_251 ATPase, T2SS/T4P/T4SS family -
  G4D76_RS14115 - 205048..205332 (+) 285 WP_250130080.1 hypothetical protein -
  G4D76_RS01145 comGB 205329..206102 (+) 774 WP_250130081.1 competence type IV pilus assembly protein ComGB -
  G4D76_RS01150 comGC 206116..206439 (+) 324 WP_213810307.1 competence type IV pilus major pilin ComGC Machinery gene
  G4D76_RS01155 - 206417..206848 (+) 432 WP_256440514.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G4D76_RS01160 - 206838..207095 (+) 258 WP_026858134.1 hypothetical protein -
  G4D76_RS01165 - 207064..207480 (+) 417 WP_213810309.1 hypothetical protein -
  G4D76_RS16465 - 207659..208146 (+) 488 Protein_258 shikimate kinase -
  G4D76_RS01180 gcvT 208377..209459 (+) 1083 WP_213810311.1 glycine cleavage system aminomethyltransferase GcvT -
  G4D76_RS01185 - 210050..210436 (-) 387 WP_026858130.1 rhodanese-like domain-containing protein -
  G4D76_RS01190 - 210465..210679 (-) 215 Protein_261 SA1362 family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11824.53 Da        Isoelectric Point: 4.2845

>NTDB_id=428020 G4D76_RS01150 WP_213810307.1 206116..206439(+) (comGC) [Jeotgalicoccus sp. WY2]
MRKTIKRKFNNNEEGFTLIEMLLVLLVISVLIILIIPNIAAQSRNVQDTGCEAQVRMVQSQIEAYTINEGGTPASIEELV
PDYLTAEQVSCQNGDSITITNGEATRQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=428020 G4D76_RS01150 WP_213810307.1 206116..206439(+) (comGC) [Jeotgalicoccus sp. WY2]
ATGAGAAAAACAATTAAACGTAAATTTAACAACAATGAAGAAGGGTTTACACTGATTGAAATGCTGCTGGTACTGCTTGT
TATTTCAGTGCTGATTATACTTATTATCCCGAATATTGCCGCACAGAGCAGAAATGTACAGGACACAGGATGTGAAGCGC
AGGTCCGTATGGTTCAAAGCCAGATAGAAGCATATACAATTAATGAAGGCGGAACACCTGCGTCGATCGAGGAATTAGTG
CCCGATTATTTAACAGCTGAACAGGTCAGCTGCCAAAATGGTGATTCTATTACGATAACTAATGGCGAAGCAACGCGGCA
ATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

57.143

91.589

0.523
  comGC Staphylococcus aureus N315

57.143

91.589

0.523
  comGC/cglC Streptococcus pneumoniae TIGR4

41.053

88.785

0.364
  comGC/cglC Streptococcus pneumoniae Rx1

41.053

88.785

0.364
  comGC/cglC Streptococcus pneumoniae D39

41.053

88.785

0.364
  comGC/cglC Streptococcus pneumoniae R6

41.053

88.785

0.364
  comGC/cglC Streptococcus mitis SK321

41.053

88.785

0.364