Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G8E09_RS18025 Genome accession   NZ_CP049806
Coordinates   3810600..3812087 (+) Length   495 a.a.
NCBI ID   WP_167564212.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3805600..3817087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS18000 (G8E09_17990) ribD 3806520..3807605 (-) 1086 WP_005065700.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  G8E09_RS18005 (G8E09_17995) nrdR 3807621..3808079 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  G8E09_RS18010 (G8E09_18000) amtB 3808238..3809632 (-) 1395 WP_005079483.1 ammonium transporter -
  G8E09_RS18015 (G8E09_18005) glnK 3809690..3810028 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  G8E09_RS18020 (G8E09_18010) - 3810307..3810534 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  G8E09_RS18025 (G8E09_18015) comM 3810600..3812087 (+) 1488 WP_167564212.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G8E09_RS18030 (G8E09_18020) yieF 3812189..3812734 (+) 546 WP_167564213.1 NADPH-dependent FMN reductase -
  G8E09_RS18035 (G8E09_18025) mocR 3812759..3814192 (-) 1434 WP_167564214.1 PLP-dependent aminotransferase family protein -
  G8E09_RS18040 (G8E09_18030) - 3814303..3815079 (+) 777 WP_167564215.1 aldolase -
  G8E09_RS18045 (G8E09_18035) - 3815095..3815973 (+) 879 WP_167564216.1 dihydrodipicolinate synthase family protein -
  G8E09_RS18050 (G8E09_18040) - 3816017..3816838 (-) 822 WP_033851261.1 TorF family putative porin -
  G8E09_RS18055 (G8E09_18045) - 3816877..3817065 (-) 189 WP_167564217.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54398.34 Da        Isoelectric Point: 7.3646

>NTDB_id=428006 G8E09_RS18025 WP_167564212.1 3810600..3812087(+) (comM) [Acinetobacter pittii strain A1254]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPIDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVTQ
SSHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=428006 G8E09_RS18025 WP_167564212.1 3810600..3812087(+) (comM) [Acinetobacter pittii strain A1254]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCGCCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCTATTGCTGTAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTATCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGTCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTCCCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTAATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCCAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCTCAAAGTGAGGTCACTCAA
AGTTCTCATCTTACAGAAGCGCTCTCTTATCGGGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.499

100

0.499
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.297

100

0.487
  comM Vibrio campbellii strain DS40M4

47.475

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467