Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7090_RS22820 Genome accession   NZ_CP049786
Coordinates   4767401..4768921 (+) Length   506 a.a.
NCBI ID   WP_166184778.1    Uniprot ID   A0AAJ4KBF2
Organism   Leclercia sp. 29361     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4762401..4773921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7090_RS22800 (G7090_22800) ilvE 4763962..4764891 (-) 930 WP_166184769.1 branched-chain-amino-acid transaminase -
  G7090_RS22805 (G7090_22805) ilvM 4764908..4765177 (-) 270 WP_166184772.1 acetolactate synthase 2 small subunit -
  G7090_RS22810 (G7090_22810) ilvG 4765174..4766820 (-) 1647 WP_166184775.1 acetolactate synthase 2 catalytic subunit -
  G7090_RS23990 ilvX 4766823..4766873 (-) 51 WP_207630130.1 peptide IlvX -
  G7090_RS22815 (G7090_22815) ilvL 4766960..4767058 (-) 99 WP_001311244.1 ilv operon leader peptide -
  G7090_RS22820 (G7090_22820) comM 4767401..4768921 (+) 1521 WP_166184778.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G7090_RS22825 (G7090_22825) - 4768947..4769285 (-) 339 WP_106995960.1 DUF413 domain-containing protein -
  G7090_RS22830 (G7090_22830) hdfR 4769404..4770225 (+) 822 WP_166184781.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54992.11 Da        Isoelectric Point: 7.1692

>NTDB_id=427820 G7090_RS22820 WP_166184778.1 4767401..4768921(+) (comM) [Leclercia sp. 29361]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSSSRLSAYEFVGELALTGALRGVPGAISGALAAIQAGREIIVANDNAAEVSLIEQKGCLVAEHL
QEVCAFLEGQHELTAPAGEPFVPGNDDRDISDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAVVSLVNATSMYKQWRQRPFRAPHHSASLVAMVGGGAIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQTHTMG
ESSITVRNRVIAAQERQLVRQNKLNAHLDNAEIRRFCPLTAEDAQWLEETLTRFGLSVRAWQRLLKVARTIADLEESEKI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=427820 G7090_RS22820 WP_166184778.1 4767401..4768921(+) (comM) [Leclercia sp. 29361]
ATGTCACTGTCGGTTGTTTATACCCGCGCTGCGTTAGGCGTTAAAGCGCCGCTCATTTCCGTAGAAGTTCACCTCAGTAA
TGGCCTCCCGGGCTTAACGCTGGTCGGCCTGCCGGAAACCACCGTCAAAGAGGCCAGAGATCGGGTACGCAGCGCAATCA
TCAATAGCGGTTATACCTTTCCGGCCAAAAAGATCACCATCAATCTGGCACCGGCCGATTTACCTAAGGAAGGCGGAAGA
TATGATTTACCTATCGCCATTGCGCTTCTCGCTGCCTCTGAGCAGCTCTCCTCTTCCAGGCTAAGCGCATACGAGTTCGT
GGGTGAGCTGGCGCTCACAGGCGCATTAAGAGGGGTTCCCGGCGCGATATCTGGCGCCCTGGCGGCCATACAGGCTGGCA
GAGAGATTATCGTCGCCAACGATAACGCTGCCGAAGTCAGCCTTATCGAACAAAAAGGCTGTCTGGTGGCAGAGCACTTG
CAGGAAGTATGCGCCTTTCTGGAGGGCCAACACGAGCTGACTGCACCCGCTGGAGAGCCTTTTGTGCCAGGCAATGACGA
TCGTGATATCAGCGATATCATCGGTCAGGAGCAGGGTAAACGGGCGCTGGAAATCACCGCGGCTGGCGCGCACAATCTGC
TGCTGATTGGCCCACCTGGCACCGGCAAAACCATGCTCGCGAGCCGGCTTAATGGCCTGCTGCCGCCACTCAGCAACCAT
GAGGCGCTGGAGAGTGCGGCAGTCGTAAGTCTGGTCAACGCCACATCGATGTATAAGCAGTGGCGTCAGCGTCCCTTTCG
CGCACCTCATCACAGCGCCTCGCTCGTGGCCATGGTGGGCGGGGGTGCTATCCCTGCGCCGGGAGAGATTTCGCTGGCGC
ATAACGGCATTCTCTTTCTGGACGAGTTACCCGAGTTTGAACGACGCGTGCTGGATGCTTTACGCGAGCCTATTGAATCC
GGGCAGATCAATATCTCCCGTACCCGCGCAAAGATCAGTTATCCGGCTCGCTTCCAGCTTATCGCCGCCATGAATCCCAG
CCCAACGGGGCACTATCAAGGCAATCATAATCGCTGTTCACCAGAACAGACGCTTCGCTATCTGGGGCGTCTGTCGGGAC
CGTTTCTCGACCGCTTCGACTTATCCCTGGAGATCCCGCTACCGCCGCCAGGGTTACTAAGCCAGACGCATACCATGGGA
GAATCCAGCATTACCGTGCGAAACAGAGTGATCGCCGCGCAGGAGCGACAGCTGGTGCGGCAAAATAAACTCAATGCCCA
TCTGGATAATGCGGAGATCCGCAGGTTTTGCCCACTCACGGCAGAAGATGCCCAGTGGCTGGAAGAGACCCTTACCCGGT
TCGGCCTGTCGGTACGTGCCTGGCAGCGGCTGCTGAAGGTGGCCCGTACGATTGCCGATCTGGAGGAGAGTGAAAAGATT
GAACGCAGACACCTGCAGGAGGCCTTGAGCTATCGCGCTATCGATCGCTTGCTACTGCATCTGCAAAAAATGCTGGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Glaesserella parasuis strain SC1401

59.883

100

0.605
  comM Vibrio campbellii strain DS40M4

59.802

99.802

0.597
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.433