Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DSC_RS14745 Genome accession   NC_016147
Coordinates   3264164..3265678 (+) Length   504 a.a.
NCBI ID   WP_014162001.1    Uniprot ID   G7URK5
Organism   Pseudoxanthomonas spadix BD-a59     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3259164..3270678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSC_RS14730 (DSC_00120) speE 3261304..3262164 (+) 861 WP_014161998.1 polyamine aminopropyltransferase -
  DSC_RS14735 (DSC_00125) - 3262321..3263430 (+) 1110 WP_014161999.1 glycerophosphodiester phosphodiesterase -
  DSC_RS14740 (DSC_00130) - 3263711..3263965 (+) 255 WP_014162000.1 accessory factor UbiK family protein -
  DSC_RS14745 (DSC_00135) comM 3264164..3265678 (+) 1515 WP_014162001.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DSC_RS14750 (DSC_00140) aceA 3265743..3267047 (-) 1305 WP_014162002.1 isocitrate lyase -
  DSC_RS14755 (DSC_00145) aceB 3267245..3268891 (-) 1647 WP_014162003.1 malate synthase A -
  DSC_RS14760 (DSC_00150) - 3269007..3269969 (+) 963 WP_014162004.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53113.81 Da        Isoelectric Point: 8.5251

>NTDB_id=42741 DSC_RS14745 WP_014162001.1 3264164..3265678(+) (comM) [Pseudoxanthomonas spadix BD-a59]
MSLALVHSRARAGVHAPGVQVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIDRQVLAEWEFLGELGLTGELRPVDGVLPAVLAAARHDRRLVVPLANGGEAALVRDGGACTARTL
LEVCAMLSGSRPATPAQASDAAEAPMPDLADVRGQLHARRALEVAAAGGHHLLFVGSPGCGKTLLASRLPGILPLASEAE
ALESAAVASVSGRGLDPSRWRQRPFRAPHHTASAVALVGGGSQPRPGEISLAHNGVLFLDELTEWDRRALEVLREPLESG
TVVVSRAARSSEFPARFQLVAAMNPCPCGWAGDASGRCHCSAQAVARYRNRISGPLLDRIDLQVEVPRVPPQDLRGDAPA
GEPSAVVRARVEAARQRQLARSGLLNARLGHAQTFACCRLSAQDQALLERAIDKLQMSARAMQRTLRVARTIADLAGAAD
IATVHLSEALGYRRMEPGSTAHAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=42741 DSC_RS14745 WP_014162001.1 3264164..3265678(+) (comM) [Pseudoxanthomonas spadix BD-a59]
ATGAGTCTTGCCCTGGTGCACAGCCGTGCGCGCGCCGGCGTGCATGCCCCGGGTGTCCAGGTGGAAGTGCACCTGTCCGG
CGGCCTGCCCGCGACCCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGAGAGAGCCGCGACCGCGTGCGCGCGGCCATCC
TGTGCGCGCAGTTCGAGTTCCCCGCCCGCCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGACTTGCCGATCGCCCTGGGCATCCTGGCGGCCAGCGGCCAGATCGACCGGCAGGTGCTGGCCGAATGGGAATTCCT
GGGCGAACTGGGCCTGACCGGCGAGCTGCGCCCGGTCGACGGGGTGCTGCCGGCGGTGCTGGCCGCCGCACGCCACGACC
GCCGACTGGTGGTGCCGCTGGCCAACGGTGGCGAAGCGGCCCTGGTGCGCGACGGCGGTGCCTGCACCGCACGCACCTTG
CTGGAGGTCTGCGCGATGCTCTCCGGCAGCAGGCCGGCCACGCCGGCACAGGCCAGCGACGCGGCCGAGGCGCCGATGCC
CGACCTGGCCGACGTGCGTGGCCAGCTGCATGCACGCCGCGCGCTGGAAGTGGCCGCGGCCGGCGGCCACCATCTGCTGT
TCGTCGGAAGTCCCGGCTGCGGCAAGACCCTGCTGGCTTCGCGCCTGCCCGGCATCCTGCCGCTGGCCAGCGAAGCCGAG
GCCTTGGAAAGCGCCGCCGTCGCCTCGGTCAGCGGACGCGGCCTGGACCCGAGCCGCTGGCGCCAGCGGCCATTCCGCGC
GCCGCATCACACCGCCAGCGCGGTGGCCCTGGTCGGTGGCGGTTCGCAGCCACGGCCCGGCGAGATTTCGCTGGCGCACA
ACGGGGTGCTGTTCCTCGATGAACTGACCGAATGGGACCGTCGCGCGCTGGAGGTTTTGCGCGAGCCGCTGGAGTCGGGC
ACGGTGGTCGTGTCGCGCGCGGCGCGCAGCTCGGAATTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCCTGCCC
GTGCGGCTGGGCCGGCGATGCCAGCGGGCGCTGCCACTGCAGCGCGCAGGCGGTGGCGCGCTACCGCAACCGGATTTCCG
GGCCGCTGCTGGACCGGATCGACCTGCAGGTCGAGGTCCCGCGGGTGCCGCCGCAGGACCTGCGTGGCGATGCGCCGGCA
GGTGAACCCAGCGCCGTGGTGCGCGCGCGGGTGGAAGCGGCGCGCCAGCGCCAGCTGGCACGCAGCGGCCTGCTCAACGC
CCGGTTGGGCCACGCCCAGACCTTTGCCTGCTGTCGGCTGTCCGCCCAGGACCAGGCGCTGCTGGAACGGGCAATCGACA
AGCTGCAAATGTCGGCGCGGGCCATGCAACGCACGCTGCGGGTGGCGCGCACGATCGCCGACCTGGCCGGCGCCGCGGAC
ATTGCCACCGTGCATCTGAGCGAAGCGCTGGGCTACCGGCGCATGGAACCGGGCAGCACCGCCCACGCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7URK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.622

98.81

0.55
  comM Vibrio campbellii strain DS40M4

55.622

98.81

0.55
  comM Glaesserella parasuis strain SC1401

53.586

99.603

0.534
  comM Haemophilus influenzae Rd KW20

53.493

99.405

0.532
  comM Legionella pneumophila str. Paris

49.6

99.206

0.492
  comM Legionella pneumophila strain ERS1305867

49.6

99.206

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.442

Multiple sequence alignment