Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SMULJ23_RS07625 Genome accession   NC_017768
Coordinates   1572660..1573325 (-) Length   221 a.a.
NCBI ID   WP_002264403.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567660..1578325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS07605 (SMULJ23_1488) - 1568381..1569016 (+) 636 Protein_1484 hypothetical protein -
  SMULJ23_RS07610 (SMULJ23_1489) - 1569096..1570796 (-) 1701 WP_002291114.1 hypothetical protein -
  SMULJ23_RS07615 (SMULJ23_1490) - 1570815..1571909 (-) 1095 WP_002264404.1 hypothetical protein -
  SMULJ23_RS07620 (SMULJ23_1491) raiA 1572033..1572581 (-) 549 WP_002263024.1 ribosome-associated translation inhibitor RaiA -
  SMULJ23_RS07625 (SMULJ23_1492) comFC/cflB 1572660..1573325 (-) 666 WP_002264403.1 ComF family protein Machinery gene
  SMULJ23_RS07630 (SMULJ23_1493) comFA/cflA 1573322..1574623 (-) 1302 WP_002266344.1 DEAD/DEAH box helicase Machinery gene
  SMULJ23_RS07635 (SMULJ23_1494) - 1574696..1575325 (+) 630 WP_002263027.1 YigZ family protein -
  SMULJ23_RS07640 (SMULJ23_1495) cysK 1575416..1576342 (+) 927 WP_002263028.1 cysteine synthase A -
  SMULJ23_RS07645 (SMULJ23_1496) - 1576675..1577766 (-) 1092 WP_002263029.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.03 Da        Isoelectric Point: 8.8356

>NTDB_id=42719 SMULJ23_RS07625 WP_002264403.1 1572660..1573325(-) (comFC/cflB) [Streptococcus mutans LJ23]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAQFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=42719 SMULJ23_RS07625 WP_002264403.1 1572660..1573325(-) (comFC/cflB) [Streptococcus mutans LJ23]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGTTTTGCGCAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAAGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439

Multiple sequence alignment