Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MEALZ_RS01500 Genome accession   NC_016112
Coordinates   329469..330980 (-) Length   503 a.a.
NCBI ID   WP_014146815.1    Uniprot ID   G4SWU0
Organism   Methylotuvimicrobium alcaliphilum 20Z     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 324469..335980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEALZ_RS01490 (MEALZ_0304) - 328008..328685 (-) 678 WP_206742861.1 zinc ribbon domain-containing protein -
  MEALZ_RS01495 (MEALZ_0305) - 328992..329360 (+) 369 WP_014146814.1 hypothetical protein -
  MEALZ_RS01500 (MEALZ_0306) comM 329469..330980 (-) 1512 WP_014146815.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MEALZ_RS01505 (MEALZ_0307) ubiK 331160..331432 (-) 273 WP_014146816.1 ubiquinone biosynthesis accessory factor UbiK -
  MEALZ_RS01510 (MEALZ_0308) - 332079..332654 (-) 576 WP_014146817.1 MarR family winged helix-turn-helix transcriptional regulator -
  MEALZ_RS01515 (MEALZ_0309) - 333288..333713 (+) 426 WP_014146818.1 RNA-binding protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54303.27 Da        Isoelectric Point: 6.9592

>NTDB_id=42707 MEALZ_RS01500 WP_014146815.1 329469..330980(-) (comM) [Methylotuvimicrobium alcaliphilum 20Z]
MTLAVAYSRGRSGIDAPLVTVEVHVTSGLPALNIVGLPETAVKESRDRVRGAIINSYFEFPMQRVTINLAPADLPKEGGR
FDLAIALGILAASGQIPVGRLAEVECVGELSLGGELRPVSGVLPIAIQTRNSGKPLILPKENCAEAALIKDIDLLPANHL
LEVCAHLNGQKSIVIDEETLVLPAETESVDFSDVHGQYHVKRAFEIAASGAHNLIMLGPPGTGKSMLAARLPTILPPLTE
QQAQETAAIASISDKGLDVANWLKPPFRAPHHTASAAALVGGGGNPKPGEISLAHNGTLFLDELPEFDRRVLEVLREPLE
TGHISISRAARQAEFPARFQLIAAMNPCPCGYLGDPSGRCHCSIEQVARYRARISGPLLDRIDMHLEVPRVSREVLRKGS
EEGEENSAQIRARVVTARNIALSRQGKTNAALSAREVKQHCRLSDQGHELLEQAMDKFGLSHRAYHRILKVARTIADLAG
SDTIEIVHLSEAIGYRRLDRKTD

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=42707 MEALZ_RS01500 WP_014146815.1 329469..330980(-) (comM) [Methylotuvimicrobium alcaliphilum 20Z]
ATGACATTAGCCGTAGCCTATAGCCGCGGCCGTTCCGGAATCGATGCGCCGTTGGTGACGGTGGAAGTCCATGTTACGAG
CGGACTACCCGCGCTCAATATCGTCGGTTTACCCGAAACGGCGGTCAAGGAAAGCCGGGATCGTGTGCGCGGCGCGATCA
TCAATTCATATTTCGAATTTCCGATGCAGCGCGTCACGATCAATCTGGCTCCGGCCGATTTACCGAAGGAAGGCGGGCGT
TTCGATTTGGCAATCGCTTTGGGAATTCTTGCGGCATCAGGGCAAATTCCAGTCGGCCGCCTAGCGGAAGTCGAATGTGT
CGGCGAACTGTCGCTTGGCGGCGAGTTGCGTCCGGTCAGCGGAGTTTTACCGATAGCGATACAAACCCGGAACAGCGGAA
AACCGCTAATTCTGCCTAAAGAAAATTGCGCCGAAGCGGCCTTGATCAAAGACATCGATCTGTTGCCGGCCAATCATTTG
CTTGAAGTGTGCGCGCACCTGAACGGACAGAAATCGATCGTCATCGACGAAGAAACCCTCGTATTACCGGCGGAAACGGA
ATCGGTCGACTTTTCCGATGTACACGGTCAATATCATGTCAAGCGTGCCTTCGAAATCGCCGCATCCGGTGCGCATAATT
TGATCATGCTCGGACCGCCCGGCACCGGTAAATCGATGCTGGCCGCGCGCTTGCCGACGATTCTGCCGCCGCTGACCGAA
CAGCAGGCTCAAGAAACCGCCGCGATTGCATCGATTAGCGACAAAGGTCTCGATGTTGCCAATTGGTTGAAACCGCCGTT
TCGAGCGCCGCATCATACCGCATCGGCTGCGGCGTTGGTCGGTGGCGGCGGCAATCCGAAGCCGGGAGAAATTTCGTTGG
CTCATAACGGCACTTTGTTTTTGGACGAATTGCCCGAATTCGACCGTAGGGTTCTGGAAGTCTTACGTGAACCGCTCGAA
ACCGGTCATATCAGTATTTCGCGTGCAGCTCGGCAAGCCGAATTTCCGGCACGATTTCAATTGATTGCCGCGATGAATCC
ATGTCCATGCGGTTATCTGGGAGATCCGTCCGGACGTTGCCATTGTTCGATAGAACAAGTTGCACGATACCGTGCCCGCA
TTTCAGGGCCGTTGCTCGATCGTATCGATATGCACCTGGAGGTGCCGAGAGTGTCTCGCGAGGTGCTGCGAAAAGGTTCG
GAGGAAGGCGAAGAAAACAGCGCGCAAATCAGAGCACGTGTAGTTACGGCACGAAATATCGCGTTGTCGCGTCAAGGAAA
AACCAATGCGGCACTCAGCGCACGCGAAGTCAAACAGCATTGCCGATTATCCGATCAAGGCCATGAACTGCTCGAACAAG
CCATGGATAAGTTTGGGTTGTCGCATCGCGCCTATCACCGTATTCTCAAGGTCGCAAGAACGATTGCCGACCTAGCCGGT
TCCGACACGATAGAAATTGTTCATTTGAGCGAGGCGATCGGTTACCGCAGATTGGATAGGAAAACCGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4SWU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

99.404

0.539
  comM Vibrio campbellii strain DS40M4

53.6

99.404

0.533
  comM Glaesserella parasuis strain SC1401

52.485

100

0.525
  comM Haemophilus influenzae Rd KW20

52.183

100

0.523
  comM Legionella pneumophila str. Paris

51.509

98.807

0.509
  comM Legionella pneumophila strain ERS1305867

51.509

98.807

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.162

100

0.479

Multiple sequence alignment