Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G5S61_RS22225 Genome accession   NZ_CP049606
Coordinates   4405712..4407232 (+) Length   506 a.a.
NCBI ID   WP_039066920.1    Uniprot ID   -
Organism   Shigella boydii strain 600080     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4400712..4412232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S61_RS22200 (G5S61_22205) ilvE 4402268..4403197 (-) 930 WP_000208517.1 branched-chain-amino-acid transaminase -
  G5S61_RS22205 (G5S61_22210) ilvM 4403217..4403480 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  G5S61_RS22210 (G5S61_22215) ilvG 4403477..4405123 (-) 1647 WP_001012613.1 acetolactate synthase 2 catalytic subunit -
  G5S61_RS22215 (G5S61_22220) ilvX 4405126..4405176 (-) 51 WP_001387183.1 peptide IlvX -
  G5S61_RS22220 (G5S61_22225) ilvL 4405262..4405360 (-) 99 WP_001311244.1 ilv operon leader peptide -
  G5S61_RS22225 (G5S61_22230) comM 4405712..4407232 (+) 1521 WP_039066920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G5S61_RS22230 (G5S61_22235) maoP 4407257..4407595 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  G5S61_RS22235 (G5S61_22240) hdfR 4407714..4408553 (+) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55332.43 Da        Isoelectric Point: 7.1695

>NTDB_id=426459 G5S61_RS22225 WP_039066920.1 4405712..4407232(+) (comM) [Shigella boydii strain 600080]
MSLSIVHTRAALEVNAPPITVEVHISKGLPGLTMVGLTETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKNTLERPKPTDAVSRTLQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHQGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=426459 G5S61_RS22225 WP_039066920.1 4405712..4407232(+) (comM) [Shigella boydii strain 600080]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGAAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTAACAGAAACAACGGTGAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTAGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGAACACTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGACGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAACGAGGACTGGAAATTACCGCCGCTGGTGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACGGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGAAACGCTGATCCATC
AGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.143

99.605

0.569
  comM Legionella pneumophila str. Paris

47.791

98.419

0.47
  comM Legionella pneumophila strain ERS1305867

47.791

98.419

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437