Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5S32_RS13015 Genome accession   NZ_CP049331
Coordinates   2817021..2817545 (-) Length   174 a.a.
NCBI ID   WP_165312391.1    Uniprot ID   A0A6G7CL95
Organism   Vibrio ziniensis strain ZWAL4003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2812021..2822545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS12995 (G5S32_12995) - 2812471..2812797 (-) 327 WP_246201015.1 MSHA biogenesis protein MshK -
  G5S32_RS13000 (G5S32_13000) gspM 2812799..2813440 (-) 642 WP_165312388.1 type II secretion system protein GspM -
  G5S32_RS13005 (G5S32_13005) - 2813437..2814885 (-) 1449 WP_165312389.1 MSHA biogenesis protein MshI -
  G5S32_RS13010 (G5S32_13010) csrD 2814892..2816883 (-) 1992 WP_165312390.1 RNase E specificity factor CsrD -
  G5S32_RS13015 (G5S32_13015) ssb 2817021..2817545 (-) 525 WP_165312391.1 single-stranded DNA-binding protein Machinery gene
  G5S32_RS13020 (G5S32_13020) qstR 2817837..2818484 (+) 648 WP_165312392.1 LuxR C-terminal-related transcriptional regulator Regulator
  G5S32_RS13025 (G5S32_13025) galU 2818655..2819524 (+) 870 WP_165312393.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  G5S32_RS13030 (G5S32_13030) uvrA 2819674..2822496 (+) 2823 WP_165312394.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19214.27 Da        Isoelectric Point: 5.2456

>NTDB_id=426169 G5S32_RS13015 WP_165312391.1 2817021..2817545(-) (ssb) [Vibrio ziniensis strain ZWAL4003]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWTDQSGQERYSTEVVVQGYNGIMQMLGGRQQQGGGMGQSQPQQQGGWGQPQQPARQSQPAYQPAAQQAPQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=426169 G5S32_RS13015 WP_165312391.1 2817021..2817545(-) (ssb) [Vibrio ziniensis strain ZWAL4003]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTAGGTGGAGATCCTGAAGTTCGCTATATGCCAAGTGG
CGGTGCTGTTGCAAACATCACCATTGCAACGTCAGAAACATGGCGTGATAAAGCAACAGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGAGTAGCTCTGTATGGAAAACTTGCTGAAGTAGCAGGTGAGTACTTACGCAAAGGTTCTCAAGTCTACATT
GAAGGTCAGTTACAAACCCGTAAGTGGACAGACCAAAGCGGCCAGGAGCGTTACTCTACAGAAGTTGTTGTGCAAGGTTA
CAACGGCATTATGCAAATGCTTGGTGGCCGCCAACAACAGGGCGGTGGTATGGGTCAAAGCCAACCTCAGCAACAAGGTG
GTTGGGGACAACCTCAACAGCCTGCTAGACAAAGCCAACCTGCTTATCAGCCAGCAGCTCAGCAGGCTCCTCAGCCTCAA
TACAATGAGCCGCCAATGGATTTTGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CL95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

85.876

100

0.874
  ssb Glaesserella parasuis strain SC1401

52.381

100

0.569
  ssb Neisseria meningitidis MC58

48.876

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.876

100

0.5