Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   G5S32_RS13020 Genome accession   NZ_CP049331
Coordinates   2817837..2818484 (+) Length   215 a.a.
NCBI ID   WP_165312392.1    Uniprot ID   A0A6G7CL31
Organism   Vibrio ziniensis strain ZWAL4003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812837..2823484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS13005 (G5S32_13005) - 2813437..2814885 (-) 1449 WP_165312389.1 MSHA biogenesis protein MshI -
  G5S32_RS13010 (G5S32_13010) csrD 2814892..2816883 (-) 1992 WP_165312390.1 RNase E specificity factor CsrD -
  G5S32_RS13015 (G5S32_13015) ssb 2817021..2817545 (-) 525 WP_165312391.1 single-stranded DNA-binding protein Machinery gene
  G5S32_RS13020 (G5S32_13020) qstR 2817837..2818484 (+) 648 WP_165312392.1 LuxR C-terminal-related transcriptional regulator Regulator
  G5S32_RS13025 (G5S32_13025) galU 2818655..2819524 (+) 870 WP_165312393.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  G5S32_RS13030 (G5S32_13030) uvrA 2819674..2822496 (+) 2823 WP_165312394.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25129.22 Da        Isoelectric Point: 8.9501

>NTDB_id=426170 G5S32_RS13020 WP_165312392.1 2817837..2818484(+) (qstR) [Vibrio ziniensis strain ZWAL4003]
MPKLNYARIIYLLCMDKSCIPFQLELALEQLALPIPQIHPDQLLKNYQTDKHKILLINYQEHFLIRQSLKALKITSPHFE
TILYNVDKRLHTEELLTFGNLKGLFYQHDSPESLSEGLGEIINGKNWLPRHISSQLLHYYRYHFQAHITQATVDLTAREI
QILRCLQTGASNMQMAENLFISEFTVKSHLYQIFKKIAVKNRVQAISWANQNLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=426170 G5S32_RS13020 WP_165312392.1 2817837..2818484(+) (qstR) [Vibrio ziniensis strain ZWAL4003]
ATGCCAAAACTCAACTACGCCAGAATCATATATTTGCTCTGCATGGACAAGTCATGTATCCCCTTTCAACTCGAACTGGC
CTTAGAACAATTAGCGTTACCCATACCGCAAATCCATCCAGATCAATTATTGAAAAACTACCAAACCGATAAACACAAAA
TTTTACTGATCAACTATCAGGAACACTTTCTAATACGGCAAAGCCTTAAGGCATTAAAAATTACCAGTCCACATTTTGAA
ACAATTTTGTATAACGTCGATAAGAGACTGCACACCGAAGAGCTGCTTACCTTTGGCAACTTAAAAGGCTTGTTCTATCA
ACATGACTCACCAGAGAGCCTGAGTGAAGGATTAGGTGAAATAATCAATGGTAAAAATTGGCTTCCTCGTCATATATCAA
GCCAACTGCTTCACTATTACCGCTACCATTTTCAAGCTCACATAACACAAGCCACGGTTGACTTAACGGCGAGGGAAATT
CAGATATTGCGTTGCTTGCAAACTGGTGCATCGAACATGCAGATGGCTGAGAATCTCTTTATCAGCGAATTCACAGTAAA
GTCGCACTTGTATCAAATATTCAAAAAAATCGCGGTAAAAAATAGAGTTCAAGCCATCTCTTGGGCCAATCAAAATCTGC
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.093

99.535

0.698
  qstR Vibrio parahaemolyticus RIMD 2210633

56.019

100

0.563
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544