Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G5S32_RS00110 Genome accession   NZ_CP049331
Coordinates   26557..28083 (+) Length   508 a.a.
NCBI ID   WP_165309932.1    Uniprot ID   A0A6G7CEI1
Organism   Vibrio ziniensis strain ZWAL4003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 21557..33083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS00095 (G5S32_00095) ilvD 22100..23941 (-) 1842 WP_165309929.1 dihydroxy-acid dehydratase -
  G5S32_RS00100 (G5S32_00100) ilvM 23982..24266 (-) 285 WP_165309930.1 acetolactate synthase 2 small subunit -
  G5S32_RS00105 (G5S32_00105) ilvG 24279..25925 (-) 1647 WP_165309931.1 acetolactate synthase 2 catalytic subunit -
  G5S32_RS00110 (G5S32_00110) comM 26557..28083 (+) 1527 WP_165309932.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G5S32_RS00115 (G5S32_00115) - 28190..29068 (+) 879 WP_165309933.1 acyltransferase -
  G5S32_RS00120 (G5S32_00120) - 29109..29711 (-) 603 WP_165309934.1 thiol:disulfide interchange protein DsbA/DsbL -
  G5S32_RS00125 (G5S32_00125) - 29744..30730 (-) 987 WP_165309935.1 serine/threonine protein kinase -
  G5S32_RS00130 (G5S32_00130) ccoG 30786..32210 (-) 1425 WP_165309936.1 cytochrome c oxidase accessory protein CcoG -
  G5S32_RS00135 (G5S32_00135) - 32450..32719 (-) 270 WP_165312682.1 YihD family protein -
  G5S32_RS00140 (G5S32_00140) - 32833..33000 (-) 168 WP_165309937.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55393.59 Da        Isoelectric Point: 8.6402

>NTDB_id=426137 G5S32_RS00110 WP_165309932.1 26557..28083(+) (comM) [Vibrio ziniensis strain ZWAL4003]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSQFSFPAKKITVNLAPADLPKEGGR
FDLPIALGILAASNQIAQNHLDRHEFLGELALSGELRCVKGVLPAALAASNNQRSLVVPHWNGDQAALVDGKRHKSAQTL
LEVCADLCGQKTLSLFESSNIAPNPNMQRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPPMTD
VEAMETASVASLTQQEINLHNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVQGKTRFPARFQLVGALNPSPTGYHEGDQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGMLSNGGDR
GEPTSVVKERVLQAREKMLQRNGKVNAFLQSREIEQICPLTKPDAEFLENALHRLGLSVRAYHRIIKVARTIADLQGESQ
INRSHLAEALGYRSMDRLLKQLIAQSVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=426137 G5S32_RS00110 WP_165309932.1 26557..28083(+) (comM) [Vibrio ziniensis strain ZWAL4003]
ATGGGACTTGCGATTATTCATAGCCGAGCAAGTGTCGGTGTTGAAGCGCCTTCGGTAACGGTGGAAGTTCATATTAGTAA
TGGTATGCCAGGGTTCACTTTGGTTGGCTTGCCGGAAACTACAGTAAAGGAGTCAAGAGACAGAGTTCGCAGCGCGATCA
TCAATTCTCAGTTTTCTTTCCCAGCGAAGAAAATCACCGTCAATTTAGCTCCCGCCGATCTGCCAAAGGAGGGGGGGAGG
TTTGATTTGCCGATTGCGTTAGGTATTTTGGCTGCGTCGAATCAAATTGCGCAAAATCACTTAGATAGACATGAATTTCT
CGGAGAACTGGCTTTATCTGGCGAGCTACGTTGTGTGAAAGGTGTGCTTCCTGCGGCGTTAGCGGCATCCAACAATCAAC
GAAGTTTGGTTGTTCCTCATTGGAATGGCGATCAAGCGGCTTTGGTTGATGGCAAACGGCATAAGTCGGCTCAAACGCTA
TTGGAAGTCTGTGCCGATCTTTGTGGGCAGAAAACTCTGAGTTTGTTTGAAAGTTCAAACATAGCCCCAAACCCTAATAT
GCAACGAGATTTGCAAGATATCATCGGGCAACAACAGGGAAAACGTGCGTTAGAAATCGCGGCTGCGGGAAATCACAATC
TGTTGTTTTTAGGGCCTCCCGGTACGGGCAAAACCATGTTGGCTTCACGCTTGTGTGATTTGCTGCCGCCAATGACCGAC
GTTGAAGCAATGGAAACGGCTTCGGTGGCATCTCTCACTCAGCAAGAGATCAATCTTCACAACTGGAAACAGCGCCCGTT
TCGTTCTCCACATCACTCAAGTTCAATGGCGGCACTGGTTGGGGGCGGCTCCATTCCTCGTCCTGGAGAAATATCGTTAG
CTCACAATGGTTTACTTTTTCTCGATGAAATGCCCGAGTTTGAACGCAAGGTGCTTGATTCACTGCGTGAGCCATTGGAG
TCTGGAGAAATTATTATTTCTCGCGTACAAGGTAAAACGCGTTTCCCTGCTCGCTTTCAGTTGGTAGGTGCATTAAATCC
AAGCCCTACTGGGTACCACGAAGGAGACCAAGCCAGAGTCAATCCACAGGTGATTTTGCGCTATTTGAGTCGGTTGTCTG
GTCCTCTATTGGACAGATTTGATATGTCGATTGAGATTCCTGCATTGCCGAAAGGCATGTTATCAAACGGTGGCGATAGG
GGGGAGCCTACATCAGTAGTGAAAGAACGAGTGCTACAAGCGCGTGAAAAAATGCTACAGCGAAATGGAAAAGTGAACGC
GTTTTTGCAAAGCAGAGAGATAGAACAAATTTGTCCTCTAACCAAACCTGATGCGGAGTTTCTGGAAAATGCTTTGCATC
GTTTGGGGTTGTCCGTTCGCGCCTATCATCGCATCATCAAAGTGGCTCGTACTATTGCGGATTTACAAGGCGAGAGCCAA
ATCAATCGTTCACATTTGGCAGAAGCGCTCGGTTATCGTTCGATGGATAGATTACTTAAACAACTCATAGCACAATCTGT
AAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CEI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.404

99.803

0.852
  comM Vibrio campbellii strain DS40M4

83.235

99.803

0.831
  comM Haemophilus influenzae Rd KW20

66.601

99.606

0.663
  comM Glaesserella parasuis strain SC1401

65.882

100

0.661
  comM Legionella pneumophila str. Paris

48.703

98.622

0.48
  comM Legionella pneumophila strain ERS1305867

48.703

98.622

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.423

100

0.447