Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SBC2_RS01740 Genome accession   NZ_CP049316
Coordinates   376847..377374 (+) Length   175 a.a.
NCBI ID   WP_165086050.1    Uniprot ID   -
Organism   Caballeronia sp. SBC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 371847..382374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS01730 (SBC2_03490) uvrA 372279..375152 (-) 2874 WP_165086044.1 excinuclease ABC subunit UvrA -
  SBC2_RS01735 (SBC2_03500) - 375470..376672 (+) 1203 WP_165086047.1 MFS transporter -
  SBC2_RS01740 (SBC2_03510) ssb 376847..377374 (+) 528 WP_165086050.1 single-stranded DNA-binding protein Machinery gene
  SBC2_RS01745 (SBC2_03520) - 378172..378819 (+) 648 WP_165086052.1 response regulator transcription factor -
  SBC2_RS01750 (SBC2_03530) - 378974..379651 (+) 678 WP_165086055.1 response regulator transcription factor -
  SBC2_RS01755 (SBC2_03540) - 379749..380393 (+) 645 WP_165086057.1 response regulator transcription factor -
  SBC2_RS01760 (SBC2_03550) - 380623..381381 (+) 759 WP_165086060.1 aquaporin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18093.03 Da        Isoelectric Point: 5.9743

>NTDB_id=426043 SBC2_RS01740 WP_165086050.1 376847..377374(+) (ssb) [Caballeronia sp. SBC2]
MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRFKDKTSGEMKELTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYTDQAGVEKYATEIVAEQMQMLGGRSGAGGGGGDEGYSRAPAERSGGGGASRGGAAAGRPAGGGSAGGAGRPSA
PAGGGFDEMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=426043 SBC2_RS01740 WP_165086050.1 376847..377374(+) (ssb) [Caballeronia sp. SBC2]
ATGGCATCCGTCAATAAAGTCATTCTCGTCGGAAATCTGGGAGCCGATCCGGAAACCCGCTATCTGCCGAGCGGCGACGC
CGTGGCCAACATCCGTCTTGCCACCACGGATCGCTTCAAGGACAAGACGTCCGGCGAGATGAAGGAGCTGACGGAATGGC
ATCGCGTGTCGTTTTTCGGCCGGCTGGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAGGGC
CGGATCCGTACGCGTAAGTACACCGATCAAGCCGGCGTGGAAAAGTACGCGACCGAGATTGTTGCTGAACAAATGCAGAT
GCTGGGTGGACGCAGCGGCGCAGGCGGCGGTGGTGGCGATGAAGGCTACAGCCGTGCGCCTGCCGAGCGCAGCGGCGGCG
GTGGTGCTAGCCGAGGCGGTGCTGCGGCCGGACGTCCGGCAGGCGGCGGTAGCGCTGGCGGCGCAGGCCGGCCGAGCGCG
CCGGCGGGCGGCGGTTTCGACGAAATGGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.108

100

0.509
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

43.678

99.429

0.434
  ssb Neisseria meningitidis MC58

43.103

99.429

0.429
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.207

99.429

0.36