Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBC2_RS01315 Genome accession   NZ_CP049316
Coordinates   288135..289715 (-) Length   526 a.a.
NCBI ID   WP_165085880.1    Uniprot ID   -
Organism   Caballeronia sp. SBC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 283135..294715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS01295 (SBC2_02600) - 283491..284831 (+) 1341 WP_165085873.1 sigma-54 dependent transcriptional regulator -
  SBC2_RS01300 (SBC2_02610) - 285215..285979 (-) 765 WP_165085875.1 DUF3592 domain-containing protein -
  SBC2_RS01305 (SBC2_02620) - 286337..286873 (-) 537 WP_165085878.1 peroxiredoxin -
  SBC2_RS01310 (SBC2_02630) - 287149..287748 (+) 600 WP_241201993.1 hypothetical protein -
  SBC2_RS42765 - 287908..288039 (+) 132 WP_255540302.1 hypothetical protein -
  SBC2_RS01315 (SBC2_02640) comM 288135..289715 (-) 1581 WP_165085880.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBC2_RS01320 (SBC2_02650) - 289818..290093 (-) 276 WP_165085883.1 accessory factor UbiK family protein -
  SBC2_RS01325 (SBC2_02660) - 290558..290896 (+) 339 WP_165085886.1 P-II family nitrogen regulator -
  SBC2_RS01330 (SBC2_02670) - 290929..292398 (+) 1470 WP_165085888.1 ammonium transporter -
  SBC2_RS01335 (SBC2_02680) gshA 292700..293989 (+) 1290 WP_165085891.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 55887.98 Da        Isoelectric Point: 8.0697

>NTDB_id=426040 SBC2_RS01315 WP_165085880.1 288135..289715(-) (comM) [Caballeronia sp. SBC2]
MSLAVVRSRAPAPGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAEALLHREFAGELSLTGALRPMRGAFAMACGAARQYARAGSALEGGSIRDNDPRMPEIYLPLG
SAAEAALVPGIDVFGAADLPALCAHLSGSVDGRLTPIRGTAPDSPLRRRAPLPDLVDVIGHPGARRALEVAAAGGHHLLM
VGPPGAGKSMLAARLPSLLPPMTDDEALSSAAILSASMLGFSPSQWRQRPFRAPHHSSSSIALVGGRNPPQPGEITLAHL
GVLFLDELPEFDRKVLETLREPLEAGRITISRAAHQADFPAACQLVAAMNPCPCGWRGDPNGRCRCTPDVATRYLRKLSG
PLLDRIDIQIELPALSPAELSGRSASIGETSATVARRVADARDRQLERQGKTNRELDGREVDAVCRLDATGEALLREAGE
RFGWSARAYYRVLKVARTIADLAAADSPTATHLAEAIQYRRAFATA

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=426040 SBC2_RS01315 WP_165085880.1 288135..289715(-) (comM) [Caballeronia sp. SBC2]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCCCCTGGGCGCGCGCCCGAGGTGACCGTAGAGGTTCATCTCGCCAA
TGGATTACCTTCGTTTTCAATCGTCGGCTTGCCCGATCTAGAAGTTCGCGAAAGCCGCGAGCGGGTGCGCGCCGCACTCC
AGAATTGCGGCTTCGATTTCCCGGTTCGCCGCATTACCGTCAATCTCGCTCCCGCCGACCTGCCGAAGGAATCCGGTCGC
TTCGACCTGCCGATCGCATTGGGCATTCTTGCGGCGAGCGGCCAGATTCCCGCTGAAGCGCTGCTGCATCGCGAATTCGC
CGGGGAGTTGTCGTTGACCGGTGCGCTGCGGCCAATGCGCGGCGCGTTCGCCATGGCCTGCGGCGCGGCACGGCAATATG
CGCGCGCCGGGTCGGCGCTCGAGGGCGGATCCATCCGCGATAACGATCCCCGCATGCCCGAAATCTATCTGCCTCTGGGG
AGCGCGGCGGAAGCGGCGCTGGTACCGGGTATCGATGTATTCGGGGCTGCTGATCTGCCCGCTTTGTGCGCACACCTCAG
TGGTTCGGTCGACGGCCGTCTTACGCCTATCCGCGGCACAGCGCCCGATTCCCCGCTGCGCAGGCGTGCGCCGTTGCCCG
ATCTCGTCGATGTGATCGGCCATCCCGGCGCACGCCGCGCGCTCGAGGTTGCGGCGGCGGGTGGGCATCATCTGCTGATG
GTCGGGCCGCCCGGCGCGGGCAAGTCAATGCTCGCCGCGCGGCTGCCCAGCCTTCTACCGCCCATGACCGATGACGAAGC
GTTGTCGTCCGCGGCCATTCTCTCCGCCAGCATGCTCGGATTTTCGCCCTCGCAATGGCGCCAGCGCCCGTTTCGCGCGC
CGCATCATTCGTCGAGTTCTATTGCGCTGGTAGGTGGACGCAATCCGCCGCAACCCGGCGAGATCACGCTGGCGCATCTC
GGCGTGCTGTTCCTCGATGAACTGCCCGAATTCGACCGAAAAGTGCTCGAAACGCTGCGCGAACCGCTAGAGGCTGGCCG
CATCACTATTTCGCGCGCTGCGCATCAGGCCGATTTTCCGGCAGCGTGTCAATTGGTCGCAGCCATGAATCCCTGCCCGT
GCGGCTGGCGTGGCGATCCGAACGGCCGCTGCCGATGCACACCCGACGTCGCCACGCGTTATCTGCGCAAATTATCCGGG
CCGCTGCTCGATCGCATCGATATCCAGATCGAATTACCCGCGTTGTCTCCGGCGGAATTGTCGGGGAGAAGTGCCTCGAT
TGGCGAAACCAGCGCGACCGTTGCACGGCGGGTCGCCGACGCACGCGACCGGCAACTCGAACGGCAGGGAAAGACGAACC
GCGAGCTGGACGGACGCGAAGTGGATGCGGTCTGCCGGCTCGATGCCACTGGGGAAGCCCTGCTCCGCGAAGCCGGTGAA
CGTTTTGGCTGGTCGGCACGCGCGTATTACCGGGTTCTGAAGGTGGCGCGTACGATCGCCGATCTCGCTGCGGCCGATTC
ACCGACCGCGACTCACCTCGCTGAAGCGATTCAATATCGACGAGCATTTGCTACTGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-419)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(428-520)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.944

99.049

0.485
  comM Haemophilus influenzae Rd KW20

48.375

99.43

0.481
  comM Vibrio campbellii strain DS40M4

48.467

99.24

0.481
  comM Glaesserella parasuis strain SC1401

47.429

99.81

0.473
  comM Legionella pneumophila str. Paris

45.889

99.43

0.456
  comM Legionella pneumophila strain ERS1305867

45.889

99.43

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.945

97.338

0.428