Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GYO_RS34605 | Genome accession | NC_016047 |
| Coordinates | 2538340..2538636 (-) | Length | 98 a.a. |
| NCBI ID | WP_014114400.1 | Uniprot ID | G4NQ96 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2533340..2543636
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS34560 (GYO_2722) | tasA | 2533748..2534533 (-) | 786 | WP_014114390.1 | biofilm matrix protein TasA | - |
| GYO_RS34565 (GYO_2723) | sipW | 2534597..2535169 (-) | 573 | WP_014114391.1 | signal peptidase I SipW | - |
| GYO_RS34570 (GYO_2724) | tapA | 2535153..2535914 (-) | 762 | WP_014114392.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GYO_RS34575 (GYO_2725) | - | 2536185..2536511 (+) | 327 | WP_014114393.1 | YqzG/YhdC family protein | - |
| GYO_RS34580 (GYO_2726) | - | 2536553..2536732 (-) | 180 | WP_003226330.1 | YqzE family protein | - |
| GYO_RS34585 (GYO_2727) | comGG | 2536804..2537178 (-) | 375 | WP_014114394.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GYO_RS34590 | comGF | 2537179..2537562 (-) | 384 | WP_041520999.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GYO_RS34595 (GYO_2731) | comGE | 2537588..2537935 (-) | 348 | WP_014114398.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GYO_RS34600 (GYO_2732) | comGD | 2537919..2538350 (-) | 432 | WP_014114399.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GYO_RS34605 (GYO_2733) | comGC | 2538340..2538636 (-) | 297 | WP_014114400.1 | comG operon protein ComGC | Machinery gene |
| GYO_RS34610 (GYO_2734) | comGB | 2538650..2539687 (-) | 1038 | WP_014114401.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GYO_RS34615 (GYO_2735) | comGA | 2539674..2540744 (-) | 1071 | WP_014114402.1 | competence protein ComGA | Machinery gene |
| GYO_RS34625 (GYO_2736) | - | 2540958..2541368 (-) | 411 | WP_014114403.1 | CBS domain-containing protein | - |
| GYO_RS34630 (GYO_2737) | - | 2541431..2542384 (-) | 954 | WP_014114404.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10844.72 Da Isoelectric Point: 6.4730
>NTDB_id=42594 GYO_RS34605 WP_014114400.1 2538340..2538636(-) (comGC) [Bacillus spizizenii TU-B-10]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMIKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMIKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
Nucleotide
Download Length: 297 bp
>NTDB_id=42594 GYO_RS34605 WP_014114400.1 2538340..2538636(-) (comGC) [Bacillus spizizenii TU-B-10]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGCTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAGAAAAAGGGCTGTGAAGGCCTTCAAAACATGATTAAGGCACAAATGACTG
CATTTGAGCTTGACCATGAAGGACAGACACCGAGTCTTGCTGATTTACAATCAGAGGGTTATGTGAAAAAGGATGCAGTT
TGTCCAAATGGGAAGCACATTATTATCACTGGCGGAGAAGTTAAGGTTGAACATTAA
ATGAATGAGAAAGGATTTACACTTGTTGAAATGCTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAGAAAAAGGGCTGTGAAGGCCTTCAAAACATGATTAAGGCACAAATGACTG
CATTTGAGCTTGACCATGAAGGACAGACACCGAGTCTTGCTGATTTACAATCAGAGGGTTATGTGAAAAAGGATGCAGTT
TGTCCAAATGGGAAGCACATTATTATCACTGGCGGAGAAGTTAAGGTTGAACATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
97.959 |
100 |
0.98 |
| comGC | Staphylococcus aureus MW2 |
40.217 |
93.878 |
0.378 |
| comGC | Staphylococcus aureus N315 |
40.217 |
93.878 |
0.378 |
| comYC | Streptococcus suis isolate S10 |
48 |
76.531 |
0.367 |