Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | GYO_RS34610 | Genome accession | NC_016047 |
| Coordinates | 2538650..2539687 (-) | Length | 345 a.a. |
| NCBI ID | WP_014114401.1 | Uniprot ID | G4NQ97 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2533650..2544687
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS34560 (GYO_2722) | tasA | 2533748..2534533 (-) | 786 | WP_014114390.1 | biofilm matrix protein TasA | - |
| GYO_RS34565 (GYO_2723) | sipW | 2534597..2535169 (-) | 573 | WP_014114391.1 | signal peptidase I SipW | - |
| GYO_RS34570 (GYO_2724) | tapA | 2535153..2535914 (-) | 762 | WP_014114392.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GYO_RS34575 (GYO_2725) | - | 2536185..2536511 (+) | 327 | WP_014114393.1 | YqzG/YhdC family protein | - |
| GYO_RS34580 (GYO_2726) | - | 2536553..2536732 (-) | 180 | WP_003226330.1 | YqzE family protein | - |
| GYO_RS34585 (GYO_2727) | comGG | 2536804..2537178 (-) | 375 | WP_014114394.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GYO_RS34590 | comGF | 2537179..2537562 (-) | 384 | WP_041520999.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GYO_RS34595 (GYO_2731) | comGE | 2537588..2537935 (-) | 348 | WP_014114398.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GYO_RS34600 (GYO_2732) | comGD | 2537919..2538350 (-) | 432 | WP_014114399.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GYO_RS34605 (GYO_2733) | comGC | 2538340..2538636 (-) | 297 | WP_014114400.1 | comG operon protein ComGC | Machinery gene |
| GYO_RS34610 (GYO_2734) | comGB | 2538650..2539687 (-) | 1038 | WP_014114401.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GYO_RS34615 (GYO_2735) | comGA | 2539674..2540744 (-) | 1071 | WP_014114402.1 | competence protein ComGA | Machinery gene |
| GYO_RS34625 (GYO_2736) | - | 2540958..2541368 (-) | 411 | WP_014114403.1 | CBS domain-containing protein | - |
| GYO_RS34630 (GYO_2737) | - | 2541431..2542384 (-) | 954 | WP_014114404.1 | magnesium transporter CorA family protein | - |
| GYO_RS34635 (GYO_2738) | - | 2542528..2543856 (+) | 1329 | WP_014114405.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39829.03 Da Isoelectric Point: 9.1089
>NTDB_id=42595 GYO_RS34610 WP_014114401.1 2538650..2539687(-) (comGB) [Bacillus spizizenii TU-B-10]
MKQIRKTWPLKDQAQLLKRLGEMTEGGYTLLDGIRLMELQMNKRQAADLTDAITRLREGAPFYQVLKGLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQAIIIPQFSGIYQSMNMETTRSTDMLFAFF
QHIDLVIILLALFAGGIGLYYWLVFKKKSPARQMLICVRIPLVGNLVRLFNSYFFSLQLSSLLQSGLSIYDSLNAFKHQT
FLPFYRCEAEQVIERLKAGESIETAICESPFYETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILIVYLSMLLPMYQMMNQM
MKQIRKTWPLKDQAQLLKRLGEMTEGGYTLLDGIRLMELQMNKRQAADLTDAITRLREGAPFYQVLKGLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQAIIIPQFSGIYQSMNMETTRSTDMLFAFF
QHIDLVIILLALFAGGIGLYYWLVFKKKSPARQMLICVRIPLVGNLVRLFNSYFFSLQLSSLLQSGLSIYDSLNAFKHQT
FLPFYRCEAEQVIERLKAGESIETAICESPFYETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILIVYLSMLLPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=42595 GYO_RS34610 WP_014114401.1 2538650..2539687(-) (comGB) [Bacillus spizizenii TU-B-10]
ATGAAACAGATTAGAAAAACCTGGCCGTTAAAGGATCAAGCCCAGTTATTGAAGCGGCTCGGTGAAATGACGGAGGGCGG
ATATACGCTTCTGGATGGAATACGGCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATGCGATCA
CTCGTTTGAGGGAAGGGGCCCCGTTTTATCAAGTATTAAAGGGTTTGTCATTTCATAAGGAAGCCGTAGGTATCTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCCTCCATGATTCAGAGCGGAGAGCTGCTGGAACGCAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGATATCCGCTTTTCCTCATCTTCACAGTCGCTGTCATGTTTTATATGTTACAGGCCATCA
TCATTCCTCAGTTTTCCGGTATTTATCAATCGATGAATATGGAAACCACACGTTCAACTGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTAATCATATTGTTGGCTCTATTTGCAGGAGGTATCGGGCTTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTTATTTGTGTCAGAATTCCTTTAGTTGGAAACCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTACAATCAGGTCTCTCAATATATGACAGCCTTAACGCATTTAAACATCAAACG
TTTCTCCCTTTTTACCGCTGCGAGGCTGAACAAGTGATTGAACGGCTAAAAGCTGGTGAATCAATTGAAACCGCTATTTG
TGAAAGCCCTTTTTATGAAACTGATTTTTCAAAAGTCATATCTCACGGACAGCTGAGCGGCCGCCTTGATCGGGAGCTTT
TCACATACAGTCAGTTCATATTGCAGCGGCTGGAACACAAGGCGCAAAAATGGACAGGCATCCTTCAGCCTATGATTTAT
GGATTTGTTGCAGCGATGATCTTAATTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAACAGATTAGAAAAACCTGGCCGTTAAAGGATCAAGCCCAGTTATTGAAGCGGCTCGGTGAAATGACGGAGGGCGG
ATATACGCTTCTGGATGGAATACGGCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATGCGATCA
CTCGTTTGAGGGAAGGGGCCCCGTTTTATCAAGTATTAAAGGGTTTGTCATTTCATAAGGAAGCCGTAGGTATCTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCCTCCATGATTCAGAGCGGAGAGCTGCTGGAACGCAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGATATCCGCTTTTCCTCATCTTCACAGTCGCTGTCATGTTTTATATGTTACAGGCCATCA
TCATTCCTCAGTTTTCCGGTATTTATCAATCGATGAATATGGAAACCACACGTTCAACTGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTAATCATATTGTTGGCTCTATTTGCAGGAGGTATCGGGCTTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTTATTTGTGTCAGAATTCCTTTAGTTGGAAACCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTACAATCAGGTCTCTCAATATATGACAGCCTTAACGCATTTAAACATCAAACG
TTTCTCCCTTTTTACCGCTGCGAGGCTGAACAAGTGATTGAACGGCTAAAAGCTGGTGAATCAATTGAAACCGCTATTTG
TGAAAGCCCTTTTTATGAAACTGATTTTTCAAAAGTCATATCTCACGGACAGCTGAGCGGCCGCCTTGATCGGGAGCTTT
TCACATACAGTCAGTTCATATTGCAGCGGCTGGAACACAAGGCGCAAAAATGGACAGGCATCCTTCAGCCTATGATTTAT
GGATTTGTTGCAGCGATGATCTTAATTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
92.879 |
93.623 |
0.87 |