Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6N82_RS11065 Genome accession   NZ_CP049259
Coordinates   2257991..2258509 (+) Length   172 a.a.
NCBI ID   WP_165196459.1    Uniprot ID   A0A6G6XBK1
Organism   Altererythrobacter sp. BO-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2252991..2263509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6N82_RS11035 (G6N82_11035) - 2253362..2253805 (-) 444 WP_165196449.1 YcgN family cysteine cluster protein -
  G6N82_RS11040 (G6N82_11040) - 2253793..2254410 (-) 618 WP_165196451.1 SCO family protein -
  G6N82_RS11045 (G6N82_11045) - 2254481..2255110 (+) 630 WP_346773731.1 ankyrin repeat domain-containing protein -
  G6N82_RS11050 (G6N82_11050) - 2255112..2255771 (+) 660 WP_165196453.1 COQ9 family protein -
  G6N82_RS11055 (G6N82_11055) - 2255871..2256122 (+) 252 WP_165196455.1 FeoA family protein -
  G6N82_RS11060 (G6N82_11060) - 2256119..2257975 (+) 1857 WP_165196457.1 ferrous iron transporter B -
  G6N82_RS11065 (G6N82_11065) ssb 2257991..2258509 (+) 519 WP_165196459.1 single-stranded DNA-binding protein Machinery gene
  G6N82_RS11070 (G6N82_11070) - 2258560..2259666 (+) 1107 WP_165196461.1 TonB family protein -
  G6N82_RS11075 (G6N82_11075) - 2259793..2260569 (+) 777 WP_165196463.1 hypothetical protein -
  G6N82_RS11080 (G6N82_11080) - 2260615..2261154 (-) 540 WP_165196465.1 DUF177 domain-containing protein -
  G6N82_RS11085 (G6N82_11085) - 2261151..2261681 (-) 531 WP_165196467.1 ubiquinol-cytochrome C chaperone family protein -
  G6N82_RS11090 (G6N82_11090) bamE 2261863..2262330 (+) 468 WP_165196469.1 outer membrane protein assembly factor BamE -
  G6N82_RS11095 (G6N82_11095) hslV 2262367..2262927 (+) 561 WP_165196471.1 ATP-dependent protease subunit HslV -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17744.35 Da        Isoelectric Point: 5.2440

>NTDB_id=425754 G6N82_RS11065 WP_165196459.1 2257991..2258509(+) (ssb) [Altererythrobacter sp. BO-6]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDKNTGERQERTEWHNVAIFSEGLVGVVERFLKKGSKVYI
EGQLQTRKWQDQNGQDRYTTEVVIRGMNGTLTMLDGASGGGGGGGGYGGGQRSGGGYGGGGQSSGGFGGGGQGGSSGGGG
SNYDDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=425754 G6N82_RS11065 WP_165196459.1 2257991..2258509(+) (ssb) [Altererythrobacter sp. BO-6]
ATGGCCGGGTCACTCAACAAGGTAATGCTCATCGGGAACCTGGGGGCCGATCCGGAAATCCGCAGCTTCCAGAACGGCGG
CAAGGTCGCCAATCTGCGCATCGCCACCAGCGAGACGTGGAAGGACAAGAACACCGGCGAGCGGCAGGAACGGACCGAGT
GGCACAACGTCGCGATCTTCTCTGAAGGTCTGGTCGGCGTGGTCGAGCGTTTTCTGAAGAAGGGCAGCAAGGTCTATATC
GAGGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAACGGGCAGGACCGTTACACCACCGAAGTGGTGATCCGCGGCAT
GAATGGCACGCTGACCATGCTTGACGGCGCGAGCGGCGGCGGTGGTGGCGGTGGCGGCTATGGCGGCGGCCAGCGTTCGG
GCGGAGGTTATGGCGGTGGCGGCCAGTCGAGCGGCGGCTTCGGCGGCGGCGGGCAGGGCGGCTCGTCGGGCGGCGGCGGC
TCCAATTACGACGATCTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6XBK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.867

100

0.512
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.5
  ssb Neisseria gonorrhoeae MS11

39.56

100

0.419
  ssb Neisseria meningitidis MC58

38.547

100

0.401
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.872

100

0.384