Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNIT_RS16930 Genome accession   NC_016041
Coordinates   4005227..4006798 (+) Length   523 a.a.
NCBI ID   WP_014110541.1    Uniprot ID   G4QNW2
Organism   Brumicola nitratireducens FR1064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4000227..4011798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNIT_RS16920 (GNIT_3574) ilvA 4001440..4003014 (-) 1575 WP_041247003.1 threonine ammonia-lyase, biosynthetic -
  GNIT_RS16925 (GNIT_3575) ilvD 4003035..4004882 (-) 1848 WP_014110540.1 dihydroxy-acid dehydratase -
  GNIT_RS16930 (GNIT_3576) comM 4005227..4006798 (+) 1572 WP_014110541.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNIT_RS16935 (GNIT_3577) - 4006800..4007000 (-) 201 WP_014110542.1 helix-turn-helix transcriptional regulator -
  GNIT_RS16940 (GNIT_3578) - 4006997..4007425 (-) 429 WP_014110543.1 hypothetical protein -
  GNIT_RS16945 (GNIT_3579) ilvY 4007601..4008464 (-) 864 WP_014110544.1 HTH-type transcriptional activator IlvY -
  GNIT_RS16950 (GNIT_3580) ilvC 4008697..4010181 (+) 1485 WP_014110545.1 ketol-acid reductoisomerase -
  GNIT_RS16955 (GNIT_3581) - 4010574..4010912 (+) 339 WP_014110546.1 hypothetical protein -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 57504.00 Da        Isoelectric Point: 8.8871

>NTDB_id=42537 GNIT_RS16930 WP_014110541.1 4005227..4006798(+) (comM) [Brumicola nitratireducens FR1064]
MSLSIVYTRANLGVDAPLVTIEVHLSNGLPAFNLVGLPETTVKESRDRVRSAIINSDFEFPSKRITVNMAPADLPKGGSR
FDLAIAIGIIAASEQLKRVDLNQYEFVGELALSGNLRPIQGALPMAFAASKSNRQLVLPKQNGDEASLVSAAQIIAANSL
TEVYLHLCNKQKISAHIAKKTKPQPSSYGDMSDIVEQQHAKRALEIAAAGAHNILFFGPAGTGKSMLANRLLSIMPELDD
ESALTSASIRSISGDKICLSTWRNRAFRQPHHTSSAAALVGGGSYPKPGEISLAHKGILFLDELPEFGRHILDVLREPME
TGVINISRAAQKVVYPADFQLVCAMNPSPTGDIDDQRANPDQVLRYLNRISGPFLDRIDLQVNVPRIDLSKALKIKHRGE
LGVSHSQASVHDIMQSGRQIETSEIVKCRVMAAQERQLKRQGKLNKSLSGKEIEQYCPLSETESLFLSKAMQSMNLSMRA
YHRTMRVARTIADLECLERVNQRHLAEALSFRSFDRMLNELSE

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=42537 GNIT_RS16930 WP_014110541.1 4005227..4006798(+) (comM) [Brumicola nitratireducens FR1064]
ATGTCTTTATCTATTGTCTACACCCGCGCAAATTTGGGTGTTGATGCTCCGCTCGTCACTATTGAGGTGCATTTGTCGAA
TGGATTACCCGCGTTTAACTTAGTTGGTCTGCCCGAGACGACGGTGAAAGAGTCAAGAGATCGTGTTCGCAGCGCAATCA
TAAACTCAGATTTTGAATTCCCATCAAAACGCATCACCGTGAACATGGCGCCTGCCGACTTACCTAAAGGAGGAAGTCGC
TTCGATTTAGCAATCGCGATTGGCATTATTGCTGCTAGTGAGCAGCTTAAAAGAGTCGATTTAAATCAATATGAGTTTGT
GGGTGAATTAGCACTTTCAGGAAATTTGCGCCCGATACAGGGAGCTTTACCCATGGCGTTTGCTGCATCAAAATCGAATC
GGCAACTCGTTCTACCAAAGCAAAATGGTGATGAGGCAAGCCTAGTAAGCGCCGCACAAATTATTGCGGCAAATTCACTG
ACTGAGGTTTATTTGCATTTGTGTAATAAGCAAAAAATATCTGCTCACATAGCAAAGAAGACAAAACCCCAACCTTCATC
TTATGGTGATATGTCGGATATTGTTGAACAACAGCATGCTAAACGAGCCCTAGAAATTGCTGCAGCAGGTGCGCATAACA
TCCTTTTCTTTGGACCAGCAGGGACCGGAAAAAGCATGCTGGCAAACAGGCTGCTGTCAATAATGCCTGAGTTAGATGAC
GAATCAGCCCTGACATCGGCTTCTATTCGCTCAATTTCGGGAGACAAAATTTGTTTATCCACATGGCGCAATCGTGCTTT
TAGACAACCGCATCATACCAGTTCAGCTGCAGCCCTAGTTGGCGGTGGCAGTTATCCAAAACCGGGAGAGATTTCACTCG
CACACAAGGGCATTCTGTTCTTGGACGAACTACCCGAGTTCGGTAGACATATACTAGATGTTCTTCGCGAGCCAATGGAA
ACCGGTGTGATCAATATTTCCCGCGCTGCACAAAAAGTAGTGTATCCAGCAGATTTCCAACTGGTATGTGCGATGAATCC
GAGTCCAACTGGGGATATTGATGATCAACGCGCCAACCCAGATCAAGTATTACGCTACTTGAATCGCATATCCGGTCCTT
TCCTTGACCGAATTGACCTGCAGGTTAATGTGCCCCGAATCGATTTAAGCAAAGCCTTAAAAATTAAGCATCGAGGTGAG
CTTGGTGTTAGCCACTCGCAAGCAAGTGTGCACGATATAATGCAATCAGGCCGGCAAATTGAAACAAGTGAGATTGTGAA
ATGCAGAGTGATGGCAGCGCAAGAGAGGCAATTAAAGCGTCAGGGCAAGTTAAACAAAAGCTTAAGCGGTAAAGAAATTG
AGCAGTATTGCCCGTTAAGCGAAACAGAAAGTCTATTCTTAAGCAAAGCAATGCAGAGTATGAACCTGTCGATGCGCGCC
TATCATCGAACGATGCGTGTTGCTCGCACTATTGCCGACTTGGAATGCCTTGAGCGCGTAAATCAACGGCATTTGGCCGA
AGCGCTGAGTTTTAGAAGCTTCGACCGAATGCTCAATGAATTAAGCGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(421-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4QNW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.389

100

0.545
  comM Vibrio campbellii strain DS40M4

53.244

100

0.533
  comM Haemophilus influenzae Rd KW20

52.652

100

0.532
  comM Glaesserella parasuis strain SC1401

50.851

100

0.514
  comM Legionella pneumophila str. Paris

46.743

99.809

0.467
  comM Legionella pneumophila strain ERS1305867

46.743

99.809

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.557

100

0.426

Multiple sequence alignment