Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G5C52_RS13575 Genome accession   NZ_CP049188
Coordinates   2866687..2868207 (-) Length   506 a.a.
NCBI ID   WP_045337103.1    Uniprot ID   A0A837F7F6
Organism   Enterobacter hormaechei strain Y323     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2861687..2873207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C52_RS13565 (G5C52_13555) hdfR 2865378..2866199 (-) 822 WP_003860190.1 HTH-type transcriptional regulator HdfR -
  G5C52_RS13570 (G5C52_13560) - 2866318..2866656 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  G5C52_RS13575 (G5C52_13565) comM 2866687..2868207 (-) 1521 WP_045337103.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G5C52_RS13580 (G5C52_13570) ilvL 2868549..2868647 (+) 99 WP_001311244.1 ilv operon leader peptide -
  G5C52_RS24915 ilvX 2868734..2868784 (+) 51 WP_192930497.1 peptide IlvX -
  G5C52_RS13585 (G5C52_13575) ilvG 2868787..2870433 (+) 1647 WP_032608559.1 acetolactate synthase 2 catalytic subunit -
  G5C52_RS13590 (G5C52_13580) ilvM 2870430..2870693 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  G5C52_RS13595 (G5C52_13585) ilvE 2870712..2871641 (+) 930 WP_003860182.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54748.69 Da        Isoelectric Point: 7.3360

>NTDB_id=425324 G5C52_RS13575 WP_045337103.1 2866687..2868207(-) (comM) [Enterobacter hormaechei strain Y323]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSATVRERVIAAQARQYVRQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=425324 G5C52_RS13575 WP_045337103.1 2866687..2868207(-) (comM) [Enterobacter hormaechei strain Y323]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGATGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGGCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAAGGGC
GAAAGCTCAGCAACAGTGCGTGAACGGGTTATTGCGGCACAGGCGCGGCAGTATGTTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCGGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837F7F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.439