Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G4U59_RS00885 Genome accession   NZ_CP049154
Coordinates   192066..193586 (-) Length   506 a.a.
NCBI ID   WP_097577621.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain C105731     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 187066..198586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4U59_RS00875 (G4U59_00865) hdfR 190708..191541 (-) 834 WP_104669286.1 HTH-type transcriptional regulator HdfR -
  G4U59_RS00880 (G4U59_00870) - 191649..191987 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  G4U59_RS00885 (G4U59_00875) comM 192066..193586 (-) 1521 WP_097577621.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G4U59_RS00890 (G4U59_00880) ilvL 193938..194036 (+) 99 WP_071601137.1 ilv operon leader peptide -
  G4U59_RS00895 (G4U59_00885) ilvG 194175..195821 (+) 1647 WP_088278167.1 acetolactate synthase 2 catalytic subunit -
  G4U59_RS00900 (G4U59_00890) ilvM 195818..196075 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  G4U59_RS00905 (G4U59_00895) - 196096..197025 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54902.27 Da        Isoelectric Point: 7.5785

>NTDB_id=425005 G4U59_RS00885 WP_097577621.1 192066..193586(-) (comM) [Cronobacter sakazakii strain C105731]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVMVSRERQLARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=425005 G4U59_RS00885 WP_097577621.1 192066..193586(-) (comM) [Cronobacter sakazakii strain C105731]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTCATCATCTG
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAAGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGACATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACTATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCTATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTATTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCAGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATGGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCCAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTTGCACGCACAATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCGATAGACAGGATGCTGGCTCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.106

99.012

0.466
  comM Legionella pneumophila strain ERS1305867

47.106

99.012

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439