Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G4U62_RS07170 Genome accession   NZ_CP049144
Coordinates   1519364..1520884 (-) Length   506 a.a.
NCBI ID   WP_148737634.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain C79     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1514364..1525884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4U62_RS07160 (G4U62_07155) hdfR 1518006..1518839 (-) 834 WP_097569832.1 HTH-type transcriptional regulator HdfR -
  G4U62_RS07165 (G4U62_07160) - 1518947..1519285 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  G4U62_RS07170 (G4U62_07165) comM 1519364..1520884 (-) 1521 WP_148737634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G4U62_RS07175 (G4U62_07170) ilvL 1521236..1521334 (+) 99 WP_071601137.1 ilv operon leader peptide -
  G4U62_RS07180 (G4U62_07175) ilvG 1521473..1523119 (+) 1647 WP_148737630.1 acetolactate synthase 2 catalytic subunit -
  G4U62_RS07185 (G4U62_07180) ilvM 1523116..1523373 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  G4U62_RS07190 (G4U62_07185) - 1523394..1524323 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54902.27 Da        Isoelectric Point: 7.5785

>NTDB_id=424948 G4U62_RS07170 WP_148737634.1 1519364..1520884(-) (comM) [Cronobacter sakazakii strain C79]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGDYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHISRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVMVSRERQLARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=424948 G4U62_RS07170 WP_148737634.1 1519364..1520884(-) (comM) [Cronobacter sakazakii strain C79]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATCTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGACTATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTGGTGGCTCATCATCTG
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCCCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGTGCATCGCTTAACGCTATGGTGGGCGGAGGAGCTATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTATTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATATTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGTGCGCAAGTAAGGGAACGAGTCATGGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCTAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCCCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACGATTGCGGATTGTGAACAGAAACAATGGATT
GGTCGTGAACATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCTCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.69

100

0.621
  comM Vibrio cholerae strain A1552

60.956

99.209

0.605
  comM Glaesserella parasuis strain SC1401

59.961

100

0.601
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Legionella pneumophila str. Paris

47.505

99.012

0.47
  comM Legionella pneumophila strain ERS1305867

47.505

99.012

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.443