Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G5S34_RS00405 Genome accession   NZ_CP049139
Coordinates   92255..93790 (-) Length   511 a.a.
NCBI ID   WP_182993467.1    Uniprot ID   -
Organism   Herbaspirillum frisingense strain IAC152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 87255..98790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S34_RS00385 (G5S34_00385) - 88273..88617 (-) 345 WP_102664087.1 DUF1840 domain-containing protein -
  G5S34_RS00390 (G5S34_00390) - 88795..89322 (-) 528 WP_182993465.1 hypothetical protein -
  G5S34_RS00395 (G5S34_00395) - 89464..91470 (+) 2007 WP_182993466.1 OPT family oligopeptide transporter -
  G5S34_RS00400 (G5S34_00400) - 91479..92111 (-) 633 WP_006713267.1 LysE family translocator -
  G5S34_RS00405 (G5S34_00405) comM 92255..93790 (-) 1536 WP_182993467.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G5S34_RS00410 (G5S34_00410) - 93864..94109 (-) 246 WP_006713294.1 accessory factor UbiK family protein -
  G5S34_RS00415 (G5S34_00415) - 94528..95310 (+) 783 WP_182993468.1 TorF family putative porin -
  G5S34_RS00420 (G5S34_00420) - 95323..95661 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  G5S34_RS00425 (G5S34_00425) - 95678..97210 (+) 1533 WP_182993469.1 ammonium transporter -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54345.02 Da        Isoelectric Point: 8.9792

>NTDB_id=424884 G5S34_RS00405 WP_182993467.1 92255..93790(-) (comM) [Herbaspirillum frisingense strain IAC152]
MSLAVLRSRALAGMAAPPVTVEVHLANGLPSFTIVGLPEAEVKEAKDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSDHLDDYEYAGELSLSGQLRPIRGALAMTCAMQHPGEPDRRQRAFILPAGNADEAALVQQATI
LPAASLLDVCAHFSAGDESGRLQRHRGATGAGAAGRRPAYPDFSDIKGQLRARRAMEVAAAGGHSILLVGPPGAGKSMLA
TRFAGILPPMSEAQALESAAVQSLAGHFDSARWKQRPYRAPHHTASAVALVGGGGTPRPGEISLAHHGVLFLDEIAEYPR
SVLDVLRQPMESGHIVISRAARQAEFPARFQLVAAMNPCPCGFYADPTGRCRCTPELVKRYQQRLSGPLLDRIDMQLQVA
ALTPTELGAPGQGESSDAIAARVAAAAERQWQRQGTPNSQLSGSAVDRYCDPGAEGAQLLQQAMVRLQWSARAYHRVLRL
ARTIADLAGAPAIQAAHIAEAIQYRRALNTG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=424884 G5S34_RS00405 WP_182993467.1 92255..93790(-) (comM) [Herbaspirillum frisingense strain IAC152]
ATGAGCCTGGCGGTCTTGCGCAGCCGCGCGCTGGCCGGCATGGCCGCCCCACCGGTGACGGTGGAAGTGCATCTGGCCAA
TGGCCTGCCATCCTTCACCATCGTCGGTCTTCCCGAAGCCGAAGTGAAGGAAGCCAAGGACCGCGTCCGGGCGGCGCTGC
AGAATGCGCGGTTCGAATTCCCGGCACGACGCATCACGGTCAACCTGGCGCCTGCCGACCTTCCCAAGGAATCCGGGCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTGGCGGCCTCCGGGCAGATTCCCTCTGACCATCTGGATGACTATGAATACGC
CGGCGAACTGTCGCTGTCGGGCCAGTTGCGGCCGATCCGCGGCGCACTGGCGATGACCTGCGCCATGCAACACCCCGGGG
AGCCGGACCGCCGGCAACGCGCCTTCATCCTGCCGGCCGGCAATGCCGACGAGGCGGCGCTGGTGCAGCAGGCGACCATC
CTTCCAGCCGCGTCGCTGCTGGATGTATGCGCGCATTTCAGCGCCGGCGACGAGAGCGGCCGTCTGCAGCGCCATCGAGG
CGCCACCGGGGCCGGAGCAGCGGGCAGGCGCCCGGCCTATCCCGATTTCAGCGATATCAAGGGACAGCTCCGGGCCAGGC
GGGCGATGGAGGTGGCGGCAGCCGGGGGGCACAGCATCCTGCTGGTGGGGCCACCCGGGGCGGGCAAATCGATGCTGGCC
ACGCGTTTTGCCGGCATCCTGCCACCCATGAGCGAGGCCCAGGCGCTGGAGTCGGCGGCGGTGCAATCGCTGGCCGGCCA
CTTCGACAGCGCCCGCTGGAAACAGCGACCCTATCGCGCACCACATCACACGGCCTCCGCCGTCGCGCTGGTCGGTGGCG
GTGGCACACCCCGCCCGGGCGAGATCTCGCTGGCCCATCACGGGGTGCTGTTCCTGGACGAAATCGCGGAATACCCGCGC
AGCGTGCTTGATGTGCTGCGCCAGCCGATGGAGTCGGGTCACATCGTCATTTCACGGGCGGCACGCCAGGCGGAGTTTCC
GGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGTCCATGTGGCTTCTACGCCGATCCGACCGGACGTTGCCGCTGCA
CGCCGGAGCTGGTCAAGCGCTACCAGCAACGCCTGTCCGGCCCCCTGCTGGATCGCATCGACATGCAATTGCAGGTGGCC
GCCCTGACGCCCACAGAGCTGGGCGCGCCTGGGCAGGGGGAATCCAGTGACGCCATCGCCGCACGGGTGGCGGCCGCCGC
CGAGCGGCAATGGCAACGCCAGGGCACGCCCAACAGCCAATTGAGCGGCAGCGCGGTGGACCGGTATTGCGACCCCGGCG
CCGAGGGCGCGCAACTGCTGCAGCAGGCCATGGTCCGCCTGCAGTGGTCGGCCCGGGCCTATCACCGCGTGCTGCGGCTG
GCGCGCACCATCGCCGATCTGGCCGGCGCGCCTGCCATCCAGGCGGCGCATATTGCCGAAGCGATCCAGTACCGCCGCGC
CCTCAATACGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.085

99.217

0.507
  comM Vibrio campbellii strain DS40M4

50.69

99.217

0.503
  comM Legionella pneumophila str. Paris

48.752

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.752

100

0.497
  comM Haemophilus influenzae Rd KW20

49.803

99.413

0.495
  comM Glaesserella parasuis strain SC1401

49.705

99.609

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

98.434

0.44