Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G5C67_RS03305 Genome accession   NZ_CP049089
Coordinates   612594..613790 (-) Length   398 a.a.
NCBI ID   WP_021113189.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607594..618790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS03280 (G5C67_03255) - 608310..608699 (-) 390 WP_075630798.1 SufE family protein -
  G5C67_RS03285 (G5C67_03260) clpP 608800..609381 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  G5C67_RS03290 (G5C67_03265) clpX 609388..610638 (+) 1251 WP_075630799.1 ATP-dependent protease ATP-binding subunit ClpX -
  G5C67_RS03295 (G5C67_03270) dapE 610712..611845 (-) 1134 WP_021113185.1 succinyl-diaminopimelate desuccinylase -
  G5C67_RS03300 (G5C67_03275) - 611929..612597 (-) 669 WP_021113181.1 prepilin peptidase -
  G5C67_RS03305 (G5C67_03280) pilC 612594..613790 (-) 1197 WP_021113189.1 type II secretion system F family protein Machinery gene
  G5C67_RS03310 (G5C67_03285) pilB 613783..615168 (-) 1386 WP_021113170.1 GspE/PulE family protein Machinery gene
  G5C67_RS03315 (G5C67_03290) pilA 615216..615674 (-) 459 WP_021113149.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G5C67_RS03320 (G5C67_03295) radA 615862..617238 (+) 1377 WP_075606468.1 DNA repair protein RadA -
  G5C67_RS03325 (G5C67_03300) gmk 617291..617917 (-) 627 WP_021113158.1 guanylate kinase -
  G5C67_RS03330 (G5C67_03305) gpt 618155..618634 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45677.51 Da        Isoelectric Point: 10.1230

>NTDB_id=424643 G5C67_RS03305 WP_021113189.1 612594..613790(-) (pilC) [Glaesserella parasuis strain vHPS7]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKLLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISNGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=424643 G5C67_RS03305 WP_021113189.1 612594..613790(-) (pilC) [Glaesserella parasuis strain vHPS7]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACTCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATAAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCAAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCAACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.492

100

0.985
  pilC Haemophilus influenzae Rd KW20

38.653

100

0.389
  pilC Haemophilus influenzae 86-028NP

38.404

100

0.387