Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G5S46_RS07750 Genome accession   NZ_CP048929
Coordinates   1514350..1515846 (-) Length   498 a.a.
NCBI ID   WP_219501091.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1509350..1520846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS07715 (G5S46_07615) mraZ 1509458..1509913 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  G5S46_RS07720 (G5S46_07620) - 1510192..1511439 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  G5S46_RS07735 (G5S46_07635) - 1511880..1512701 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  G5S46_RS07740 (G5S46_07640) dsbA1 1512734..1513378 (-) 645 WP_047918176.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  G5S46_RS07745 (G5S46_07645) ftsN 1513381..1514244 (-) 864 WP_171000879.1 cell division protein FtsN -
  G5S46_RS07750 (G5S46_07650) comM 1514350..1515846 (-) 1497 WP_219501091.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G5S46_RS07755 (G5S46_07655) - 1515860..1516180 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  G5S46_RS07760 (G5S46_07660) putP 1516668..1518194 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53298.31 Da        Isoelectric Point: 7.0276

>NTDB_id=424236 G5S46_RS07750 WP_219501091.1 1514350..1515846(-) (comM) [Neisseria gonorrhoeae strain CT213]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFQFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHSARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
AEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHGASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARGKQYARQGKVNAALSVSELDSQACIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=424236 G5S46_RS07750 WP_219501091.1 1514350..1515846(-) (comM) [Neisseria gonorrhoeae strain CT213]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGTCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTCAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGTTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACTCTGCCCGCCTTGCTTTGGAAATCGCCGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACAGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
GCCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACGGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGCTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCTGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCGCGTTACCGAAGCA
AAATTTCCGGTCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGTGCGTCCGTTTTGGAACGCGTCATCGCCGCCCGCGGCAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCTGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGTAGCCTGC
TGGAAAAATTGTCTCTTTCCGCCCGCAGCTTCCACCGCATTATGCGTGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.299

100

0.494
  comM Glaesserella parasuis strain SC1401

48.611

100

0.492
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.545

100

0.43