Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IGW72_RS24405 Genome accession   NZ_CP062219
Coordinates   5321106..5321831 (-) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain JT86     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5316106..5326831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGW72_RS24380 - 5316578..5317093 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  IGW72_RS24385 rarD 5317783..5318679 (-) 897 WP_023107656.1 EamA family transporter RarD -
  IGW72_RS24390 - 5318882..5319856 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  IGW72_RS24395 - 5319918..5320676 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  IGW72_RS24400 - 5320744..5321064 (-) 321 WP_058184977.1 YfiM family lipoprotein -
  IGW72_RS24405 comF 5321106..5321831 (-) 726 WP_003103309.1 ComF family protein Machinery gene
  IGW72_RS24410 - 5321970..5322263 (-) 294 WP_003084806.1 hypothetical protein -
  IGW72_RS24415 - 5322317..5323243 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  IGW72_RS24420 - 5323361..5324119 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  IGW72_RS24425 - 5324196..5324444 (+) 249 WP_016561527.1 acetyl-CoA carboxylase -
  IGW72_RS24430 - 5324455..5325831 (+) 1377 WP_012613520.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  IGW72_RS24435 - 5325833..5326711 (+) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=424236 IGW72_RS24405 WP_003103309.1 5321106..5321831(-) (comF) [Pseudomonas aeruginosa strain JT86]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=424236 IGW72_RS24405 WP_003103309.1 5321106..5321831(-) (comF) [Pseudomonas aeruginosa strain JT86]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382