Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XACM_RS18830 Genome accession   NC_016010
Coordinates   4425917..4427437 (+) Length   506 a.a.
NCBI ID   WP_008574838.1    Uniprot ID   Q3BN85
Organism   Xanthomonas euvesicatoria pv. citrumelo F1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4420917..4432437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XACM_RS18810 (XACM_3821) - 4421773..4422429 (+) 657 WP_014091297.1 RIO1 family regulatory kinase/ATPase -
  XACM_RS18815 (XACM_3822) - 4422633..4424618 (-) 1986 WP_008574843.1 beta-N-acetylglucosaminidase domain-containing protein -
  XACM_RS18820 (XACM_3823) - 4425095..4425469 (-) 375 WP_008574841.1 P-II family nitrogen regulator -
  XACM_RS18825 (XACM_3824) - 4425623..4425901 (+) 279 WP_008574840.1 accessory factor UbiK family protein -
  XACM_RS18830 (XACM_3825) comM 4425917..4427437 (+) 1521 WP_008574838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XACM_RS18835 (XACM_3826) - 4427776..4428285 (+) 510 WP_014091298.1 lipocalin family protein -
  XACM_RS23485 (XACM_3827) - 4428508..4428684 (-) 177 WP_008574834.1 hypothetical protein -
  XACM_RS18845 (XACM_3828) - 4429064..4430626 (+) 1563 WP_041469863.1 EAL domain-containing protein -
  XACM_RS18850 (XACM_3829) - 4430691..4431812 (-) 1122 WP_014091300.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53859.55 Da        Isoelectric Point: 8.1563

>NTDB_id=42400 XACM_RS18830 WP_008574838.1 4425917..4427437(+) (comM) [Xanthomonas euvesicatoria pv. citrumelo F1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATPHLTEAIGYRKLDRALGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=42400 XACM_RS18830 WP_008574838.1 4425917..4427437(+) (comM) [Xanthomonas euvesicatoria pv. citrumelo F1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGTATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCGGCCATCGCCGGACACGTCGAAGCCTTCACCGCGCGTACCCTG
CTGGATGTCTGCGCGACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCACCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCACGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTGCGTGCCCGCGTGGTCGCCGCGCGACAGCGACAGCTTGCACGCGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCCCA
GACATCGCCACACCCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCACCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3BN85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment