Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   G4V54_RS02335 Genome accession   NZ_CP048896
Coordinates   450933..451409 (+) Length   158 a.a.
NCBI ID   WP_203004379.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445933..456409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS02310 dnaB 446495..447901 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V54_RS02315 pilH 448056..448721 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V54_RS02320 pilV 448753..449364 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V54_RS02325 pilJ 449361..450341 (+) 981 WP_203029633.1 PilW family protein Machinery gene
  G4V54_RS02330 pilK 450320..450931 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V54_RS02335 pilL 450933..451409 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V54_RS02340 - 451479..451787 (-) 309 WP_010951048.1 AzlD family protein -
  G4V54_RS02345 - 451784..452491 (-) 708 Protein_460 AzlC family ABC transporter permease -
  G4V54_RS02350 dut 452657..453109 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V54_RS02355 dapC 453187..454374 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  G4V54_RS02360 yaaA 454685..455464 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.47 Da        Isoelectric Point: 9.4067

>NTDB_id=423855 G4V54_RS02335 WP_203004379.1 450933..451409(+) (pilL) [Neisseria gonorrhoeae strain SRRSH229]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=423855 G4V54_RS02335 WP_203004379.1 450933..451409(+) (pilL) [Neisseria gonorrhoeae strain SRRSH229]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATG
CCACTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

99.367

100

0.994
  pilX Neisseria meningitidis 8013

85.443

100

0.854