Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   G4V54_RS02320 Genome accession   NZ_CP048896
Coordinates   448753..449364 (+) Length   203 a.a.
NCBI ID   WP_050169631.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 443753..454364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS02295 - 444346..444678 (+) 333 WP_003687908.1 hypothetical protein -
  G4V54_RS02300 - 445009..445518 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  G4V54_RS02305 - 445750..446331 (-) 582 WP_047923823.1 superoxide dismutase -
  G4V54_RS02310 dnaB 446495..447901 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V54_RS02315 pilH 448056..448721 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V54_RS02320 pilV 448753..449364 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V54_RS02325 pilJ 449361..450341 (+) 981 WP_203029633.1 PilW family protein Machinery gene
  G4V54_RS02330 pilK 450320..450931 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V54_RS02335 pilL 450933..451409 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V54_RS02340 - 451479..451787 (-) 309 WP_010951048.1 AzlD family protein -
  G4V54_RS02345 - 451784..452491 (-) 708 Protein_460 AzlC family ABC transporter permease -
  G4V54_RS02350 dut 452657..453109 (+) 453 WP_103195211.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.13 Da        Isoelectric Point: 4.8546

>NTDB_id=423852 G4V54_RS02320 WP_050169631.1 448753..449364(+) (pilV) [Neisseria gonorrhoeae strain SRRSH229]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=423852 G4V54_RS02320 WP_050169631.1 448753..449364(+) (pilV) [Neisseria gonorrhoeae strain SRRSH229]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837