Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   G4V54_RS02330 Genome accession   NZ_CP048896
Coordinates   450320..450931 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445320..455931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS02305 - 445750..446331 (-) 582 WP_047923823.1 superoxide dismutase -
  G4V54_RS02310 dnaB 446495..447901 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V54_RS02315 pilH 448056..448721 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V54_RS02320 pilV 448753..449364 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V54_RS02325 pilJ 449361..450341 (+) 981 WP_203029633.1 PilW family protein Machinery gene
  G4V54_RS02330 pilK 450320..450931 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V54_RS02335 pilL 450933..451409 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V54_RS02340 - 451479..451787 (-) 309 WP_010951048.1 AzlD family protein -
  G4V54_RS02345 - 451784..452491 (-) 708 Protein_460 AzlC family ABC transporter permease -
  G4V54_RS02350 dut 452657..453109 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V54_RS02355 dapC 453187..454374 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  G4V54_RS02360 yaaA 454685..455464 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=423854 G4V54_RS02330 WP_003687918.1 450320..450931(+) (pilK) [Neisseria gonorrhoeae strain SRRSH229]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=423854 G4V54_RS02330 WP_003687918.1 450320..450931(+) (pilK) [Neisseria gonorrhoeae strain SRRSH229]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1