Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   G4V54_RS02325 Genome accession   NZ_CP048896
Coordinates   449361..450341 (+) Length   326 a.a.
NCBI ID   WP_203029633.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444361..455341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS02300 - 445009..445518 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  G4V54_RS02305 - 445750..446331 (-) 582 WP_047923823.1 superoxide dismutase -
  G4V54_RS02310 dnaB 446495..447901 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V54_RS02315 pilH 448056..448721 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V54_RS02320 pilV 448753..449364 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V54_RS02325 pilJ 449361..450341 (+) 981 WP_203029633.1 PilW family protein Machinery gene
  G4V54_RS02330 pilK 450320..450931 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V54_RS02335 pilL 450933..451409 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V54_RS02340 - 451479..451787 (-) 309 WP_010951048.1 AzlD family protein -
  G4V54_RS02345 - 451784..452491 (-) 708 Protein_460 AzlC family ABC transporter permease -
  G4V54_RS02350 dut 452657..453109 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V54_RS02355 dapC 453187..454374 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36009.17 Da        Isoelectric Point: 9.7237

>NTDB_id=423853 G4V54_RS02325 WP_203029633.1 449361..450341(+) (pilJ) [Neisseria gonorrhoeae strain SRRSH229]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQFNLAKPGAKQENPLFSLKRSGMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=423853 G4V54_RS02325 WP_203029633.1 449361..450341(+) (pilJ) [Neisseria gonorrhoeae strain SRRSH229]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATTTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.292

100

0.77