Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | NH8B_RS17140 | Genome accession | NC_016002 |
| Coordinates | 3696799..3698301 (-) | Length | 500 a.a. |
| NCBI ID | WP_014088362.1 | Uniprot ID | G2IZG7 |
| Organism | Pseudogulbenkiania sp. NH8B | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3696799..3735840 | 3696799..3698301 | within | 0 |
Gene organization within MGE regions
Location: 3696799..3735840
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NH8B_RS17140 (NH8B_3525) | comM | 3696799..3698301 (-) | 1503 | WP_014088362.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| NH8B_RS17145 (NH8B_3526) | - | 3698312..3698599 (-) | 288 | WP_008952463.1 | accessory factor UbiK family protein | - |
| NH8B_RS17150 (NH8B_3527) | glnK | 3698870..3699208 (+) | 339 | WP_008952462.1 | P-II family nitrogen regulator | - |
| NH8B_RS17155 (NH8B_3528) | - | 3699240..3700544 (+) | 1305 | WP_014088364.1 | ammonium transporter | - |
| NH8B_RS17160 (NH8B_3529) | - | 3700692..3701135 (-) | 444 | WP_014088365.1 | ClpXP protease specificity-enhancing factor | - |
| NH8B_RS17165 (NH8B_3530) | - | 3701144..3701746 (-) | 603 | WP_040652169.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| NH8B_RS17170 (NH8B_3531) | - | 3701893..3702654 (-) | 762 | WP_008952458.1 | cytochrome c1 | - |
| NH8B_RS17175 (NH8B_3532) | - | 3702672..3703991 (-) | 1320 | WP_008952457.1 | cytochrome bc complex cytochrome b subunit | - |
| NH8B_RS17180 (NH8B_3533) | petA | 3704006..3704590 (-) | 585 | WP_008952456.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| NH8B_RS17185 (NH8B_3534) | - | 3704706..3705452 (-) | 747 | WP_014088368.1 | Nif3-like dinuclear metal center hexameric protein | - |
| NH8B_RS17190 (NH8B_3535) | groL | 3705628..3707265 (-) | 1638 | WP_014088369.1 | chaperonin GroEL | - |
| NH8B_RS17195 (NH8B_3536) | groES | 3707310..3707597 (-) | 288 | WP_008952453.1 | co-chaperone GroES | - |
| NH8B_RS17200 (NH8B_3537) | - | 3707746..3708888 (-) | 1143 | WP_014088370.1 | glycosyltransferase | - |
| NH8B_RS17205 (NH8B_3538) | rfbB | 3709169..3710233 (+) | 1065 | WP_014088371.1 | dTDP-glucose 4,6-dehydratase | - |
| NH8B_RS17210 (NH8B_3539) | rfbD | 3710230..3711141 (+) | 912 | WP_014088372.1 | dTDP-4-dehydrorhamnose reductase | - |
| NH8B_RS17215 (NH8B_3540) | rfbA | 3711138..3712019 (+) | 882 | WP_014088373.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| NH8B_RS17220 (NH8B_3541) | rfbC | 3712019..3712567 (+) | 549 | WP_014088374.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| NH8B_RS17225 (NH8B_3543) | pseB | 3713041..3714039 (+) | 999 | WP_014088376.1 | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | - |
| NH8B_RS17230 (NH8B_3544) | pseC | 3714039..3715187 (+) | 1149 | WP_014088377.1 | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | - |
| NH8B_RS17235 (NH8B_3545) | pseF | 3715184..3715876 (+) | 693 | WP_014088378.1 | pseudaminic acid cytidylyltransferase | - |
| NH8B_RS20985 (NH8B_3546) | - | 3715873..3716829 (+) | 957 | WP_014088379.1 | PseG/SpsG family protein | - |
| NH8B_RS20575 (NH8B_3547) | - | 3716819..3717379 (+) | 561 | WP_014088380.1 | GNAT family N-acetyltransferase | - |
| NH8B_RS20580 (NH8B_3548) | - | 3717376..3718071 (+) | 696 | WP_014088381.1 | PIG-L deacetylase family protein | - |
| NH8B_RS20585 | - | 3718078..3718764 (+) | 687 | WP_083844281.1 | methionyl-tRNA formyltransferase | - |
| NH8B_RS17240 (NH8B_3550) | pseI | 3718766..3719779 (+) | 1014 | WP_014088383.1 | pseudaminic acid synthase | - |
| NH8B_RS20990 | - | 3719831..3721567 (+) | 1737 | WP_148282996.1 | hypothetical protein | - |
| NH8B_RS20590 | - | 3721534..3722592 (+) | 1059 | WP_083844264.1 | phytanoyl-CoA dioxygenase family protein | - |
| NH8B_RS20595 | - | 3722687..3723586 (+) | 900 | WP_232503494.1 | DapH/DapD/GlmU-related protein | - |
| NH8B_RS20220 (NH8B_3553) | - | 3723583..3725325 (+) | 1743 | WP_158453625.1 | ABC transporter ATP-binding protein | - |
| NH8B_RS20600 (NH8B_3554) | - | 3725462..3726436 (+) | 975 | WP_014088387.1 | sugar transferase | - |
| NH8B_RS17265 (NH8B_3555) | - | 3726423..3727415 (+) | 993 | WP_014088388.1 | NAD-dependent epimerase/dehydratase family protein | - |
| NH8B_RS20605 (NH8B_3556) | - | 3727430..3728524 (+) | 1095 | WP_014088389.1 | DegT/DnrJ/EryC1/StrS aminotransferase family protein | - |
| NH8B_RS20610 (NH8B_3557) | - | 3728524..3729468 (+) | 945 | WP_014088390.1 | hypothetical protein | - |
| NH8B_RS17270 (NH8B_3558) | gmd | 3729469..3730593 (+) | 1125 | WP_014088391.1 | GDP-mannose 4,6-dehydratase | - |
| NH8B_RS17275 (NH8B_3559) | - | 3730701..3731678 (+) | 978 | WP_014088392.1 | GDP-L-fucose synthase | - |
| NH8B_RS20615 (NH8B_3560) | - | 3731675..3732502 (+) | 828 | WP_014088393.1 | glycosyltransferase family 2 protein | - |
| NH8B_RS20620 | - | 3732524..3733441 (+) | 918 | WP_158453626.1 | glycosyltransferase family 4 protein | - |
| NH8B_RS17280 | - | 3733540..3734358 (+) | 819 | WP_041703108.1 | glycosyltransferase | - |
| NH8B_RS17285 (NH8B_3563) | - | 3734407..3735840 (+) | 1434 | WP_041703110.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 500 a.a. Molecular weight: 53244.06 Da Isoelectric Point: 8.8150
>NTDB_id=42376 NH8B_RS17140 WP_014088362.1 3696799..3698301(-) (comM) [Pseudogulbenkiania sp. NH8B]
MTLAIVHSRALSGMEASEVSVEVHMANGLPAFAIVGLPDTEVKESRDRVRAAILTSGFTFPARKITVNLAPADLPKDSGR
FDLPIALGILVASGQVKGDALTRYEFAGELALSGQLRAVRGGLAMTCHARRAGRAFVLPPQSAAEAALVADATVYSAVTL
LEVCAHLNGLQLLPRAQAESARTTFCYPDLADVKGQGAARGALEIAAAGGHSLLLIGPPGTGKSMLASRLPGLLPPMQDD
EALEAAAVQSLGSQGFSVEAWRARPFRAPHHTASAVAMVGGGSEPRPGEVSLAHRGVLFLDELPEFDRRVLEVLREPLEN
GVIHISRAARQATFPARFQLVAAMNPCPCGYLGHRSGRCQCTPEQVARYRGKISGPLLDRIDMHIEMPTLSPDELSGQGQ
GETSAAVRERVISARRIQLARQGKANADLSGAELDRHGLVEASAQQTLLQAVERLHLSARSYHRILRVARTIADLKGAER
ISRQEVLQAVQLRRAGLPNS
MTLAIVHSRALSGMEASEVSVEVHMANGLPAFAIVGLPDTEVKESRDRVRAAILTSGFTFPARKITVNLAPADLPKDSGR
FDLPIALGILVASGQVKGDALTRYEFAGELALSGQLRAVRGGLAMTCHARRAGRAFVLPPQSAAEAALVADATVYSAVTL
LEVCAHLNGLQLLPRAQAESARTTFCYPDLADVKGQGAARGALEIAAAGGHSLLLIGPPGTGKSMLASRLPGLLPPMQDD
EALEAAAVQSLGSQGFSVEAWRARPFRAPHHTASAVAMVGGGSEPRPGEVSLAHRGVLFLDELPEFDRRVLEVLREPLEN
GVIHISRAARQATFPARFQLVAAMNPCPCGYLGHRSGRCQCTPEQVARYRGKISGPLLDRIDMHIEMPTLSPDELSGQGQ
GETSAAVRERVISARRIQLARQGKANADLSGAELDRHGLVEASAQQTLLQAVERLHLSARSYHRILRVARTIADLKGAER
ISRQEVLQAVQLRRAGLPNS
Nucleotide
Download Length: 1503 bp
>NTDB_id=42376 NH8B_RS17140 WP_014088362.1 3696799..3698301(-) (comM) [Pseudogulbenkiania sp. NH8B]
ATGACGTTGGCCATCGTTCATAGCCGGGCCTTGTCCGGCATGGAGGCTTCCGAGGTCTCTGTCGAGGTGCACATGGCCAA
TGGCCTGCCGGCGTTCGCCATCGTGGGTCTGCCCGATACCGAGGTAAAGGAAAGTCGCGACCGGGTCCGGGCCGCGATCC
TGACCTCGGGGTTTACCTTCCCGGCGCGGAAGATCACAGTGAATCTGGCTCCCGCCGATTTGCCCAAAGATTCGGGGCGC
TTCGATTTGCCGATCGCACTGGGCATTCTGGTGGCGTCCGGGCAGGTGAAGGGGGACGCTCTCACCCGCTATGAATTCGC
GGGGGAGCTGGCGTTGAGTGGCCAACTGCGAGCCGTCCGTGGTGGCTTGGCCATGACCTGCCATGCCCGGCGTGCCGGGC
GCGCTTTTGTATTGCCGCCGCAAAGTGCCGCCGAGGCCGCCTTGGTGGCCGATGCCACGGTGTATTCGGCGGTGACGCTG
CTGGAGGTTTGTGCCCACCTCAATGGTTTGCAGCTCTTGCCACGCGCGCAGGCGGAGAGTGCCCGCACCACTTTCTGCTA
TCCCGATCTGGCCGATGTCAAAGGGCAGGGGGCAGCGCGCGGGGCGCTGGAGATCGCCGCCGCGGGCGGCCACAGCTTGC
TGTTGATTGGTCCTCCGGGAACAGGGAAGTCGATGCTGGCCAGCCGTTTGCCCGGGCTGCTGCCGCCAATGCAGGATGAC
GAGGCACTGGAGGCGGCGGCGGTTCAGTCACTCGGATCGCAAGGGTTCTCTGTCGAGGCCTGGCGCGCCAGGCCATTCAG
AGCACCACACCACACCGCTTCCGCCGTGGCCATGGTGGGAGGGGGCTCCGAGCCACGTCCGGGAGAGGTCAGCCTGGCGC
ACCGTGGGGTGCTCTTCCTGGACGAATTGCCGGAGTTTGATCGTCGCGTGCTGGAGGTGCTGCGTGAACCTTTGGAGAAT
GGCGTGATCCATATCTCCCGTGCGGCCCGCCAGGCGACGTTTCCAGCCCGATTTCAGCTCGTGGCGGCAATGAATCCCTG
CCCCTGCGGTTATCTCGGGCATCGTTCCGGGCGCTGCCAGTGCACGCCGGAGCAGGTTGCACGTTATCGCGGTAAAATCT
CCGGCCCTTTGCTGGACCGGATCGACATGCATATCGAGATGCCGACCCTGTCGCCGGACGAGCTATCAGGGCAGGGGCAA
GGCGAAACGAGTGCGGCGGTGCGCGAGAGGGTGATTTCGGCACGCCGGATCCAGTTGGCGCGGCAGGGGAAGGCGAATGC
GGACCTTTCCGGGGCCGAGCTGGATCGGCATGGGTTGGTCGAAGCGTCGGCGCAGCAGACACTGCTTCAGGCGGTCGAGC
GGCTGCATCTTTCCGCTCGCAGCTATCATCGCATTCTGCGTGTGGCCCGAACCATTGCGGACTTGAAGGGCGCGGAACGG
ATATCGCGCCAGGAAGTGTTGCAGGCGGTACAACTGCGACGTGCCGGGCTGCCAAATAGCTGA
ATGACGTTGGCCATCGTTCATAGCCGGGCCTTGTCCGGCATGGAGGCTTCCGAGGTCTCTGTCGAGGTGCACATGGCCAA
TGGCCTGCCGGCGTTCGCCATCGTGGGTCTGCCCGATACCGAGGTAAAGGAAAGTCGCGACCGGGTCCGGGCCGCGATCC
TGACCTCGGGGTTTACCTTCCCGGCGCGGAAGATCACAGTGAATCTGGCTCCCGCCGATTTGCCCAAAGATTCGGGGCGC
TTCGATTTGCCGATCGCACTGGGCATTCTGGTGGCGTCCGGGCAGGTGAAGGGGGACGCTCTCACCCGCTATGAATTCGC
GGGGGAGCTGGCGTTGAGTGGCCAACTGCGAGCCGTCCGTGGTGGCTTGGCCATGACCTGCCATGCCCGGCGTGCCGGGC
GCGCTTTTGTATTGCCGCCGCAAAGTGCCGCCGAGGCCGCCTTGGTGGCCGATGCCACGGTGTATTCGGCGGTGACGCTG
CTGGAGGTTTGTGCCCACCTCAATGGTTTGCAGCTCTTGCCACGCGCGCAGGCGGAGAGTGCCCGCACCACTTTCTGCTA
TCCCGATCTGGCCGATGTCAAAGGGCAGGGGGCAGCGCGCGGGGCGCTGGAGATCGCCGCCGCGGGCGGCCACAGCTTGC
TGTTGATTGGTCCTCCGGGAACAGGGAAGTCGATGCTGGCCAGCCGTTTGCCCGGGCTGCTGCCGCCAATGCAGGATGAC
GAGGCACTGGAGGCGGCGGCGGTTCAGTCACTCGGATCGCAAGGGTTCTCTGTCGAGGCCTGGCGCGCCAGGCCATTCAG
AGCACCACACCACACCGCTTCCGCCGTGGCCATGGTGGGAGGGGGCTCCGAGCCACGTCCGGGAGAGGTCAGCCTGGCGC
ACCGTGGGGTGCTCTTCCTGGACGAATTGCCGGAGTTTGATCGTCGCGTGCTGGAGGTGCTGCGTGAACCTTTGGAGAAT
GGCGTGATCCATATCTCCCGTGCGGCCCGCCAGGCGACGTTTCCAGCCCGATTTCAGCTCGTGGCGGCAATGAATCCCTG
CCCCTGCGGTTATCTCGGGCATCGTTCCGGGCGCTGCCAGTGCACGCCGGAGCAGGTTGCACGTTATCGCGGTAAAATCT
CCGGCCCTTTGCTGGACCGGATCGACATGCATATCGAGATGCCGACCCTGTCGCCGGACGAGCTATCAGGGCAGGGGCAA
GGCGAAACGAGTGCGGCGGTGCGCGAGAGGGTGATTTCGGCACGCCGGATCCAGTTGGCGCGGCAGGGGAAGGCGAATGC
GGACCTTTCCGGGGCCGAGCTGGATCGGCATGGGTTGGTCGAAGCGTCGGCGCAGCAGACACTGCTTCAGGCGGTCGAGC
GGCTGCATCTTTCCGCTCGCAGCTATCATCGCATTCTGCGTGTGGCCCGAACCATTGCGGACTTGAAGGGCGCGGAACGG
ATATCGCGCCAGGAAGTGTTGCAGGCGGTACAACTGCGACGTGCCGGGCTGCCAAATAGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
54.545 |
99 |
0.54 |
| comM | Vibrio cholerae strain A1552 |
54.141 |
99 |
0.536 |
| comM | Haemophilus influenzae Rd KW20 |
51.703 |
99.8 |
0.516 |
| comM | Glaesserella parasuis strain SC1401 |
50.501 |
99.8 |
0.504 |
| comM | Legionella pneumophila str. Paris |
49.299 |
99.8 |
0.492 |
| comM | Legionella pneumophila strain ERS1305867 |
49.299 |
99.8 |
0.492 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
44.422 |
100 |
0.446 |