Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G4G71_RS04135 Genome accession   NZ_CP048833
Coordinates   898542..900032 (-) Length   496 a.a.
NCBI ID   WP_169935538.1    Uniprot ID   -
Organism   Pseudomonas multiresinivorans strain populi     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 893542..905032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS04115 (G4G71_04110) - 895279..896082 (-) 804 WP_169935532.1 TlpA disulfide reductase family protein -
  G4G71_RS04120 (G4G71_04115) - 896165..897613 (-) 1449 WP_169935534.1 PLP-dependent aminotransferase family protein -
  G4G71_RS04125 (G4G71_04120) - 897798..898028 (+) 231 WP_024762090.1 DUF1127 domain-containing protein -
  G4G71_RS04130 (G4G71_04125) - 898057..898545 (+) 489 WP_169935536.1 RidA family protein -
  G4G71_RS04135 (G4G71_04130) comM 898542..900032 (-) 1491 WP_169935538.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G4G71_RS04140 (G4G71_04135) - 900072..900353 (-) 282 WP_169935540.1 accessory factor UbiK family protein -
  G4G71_RS04145 (G4G71_04140) glnK 900757..901095 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  G4G71_RS04150 (G4G71_04145) - 901137..902471 (+) 1335 WP_169935542.1 ammonium transporter -
  G4G71_RS04155 (G4G71_04150) - 902578..903003 (+) 426 WP_169935544.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G4G71_RS04160 (G4G71_04155) sutA 903082..903414 (+) 333 WP_054910833.1 transcriptional regulator SutA -
  G4G71_RS04165 (G4G71_04160) - 903568..904260 (-) 693 WP_169935546.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52615.39 Da        Isoelectric Point: 7.9887

>NTDB_id=423394 G4G71_RS04135 WP_169935538.1 898542..900032(-) (comM) [Pseudomonas multiresinivorans strain populi]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPEGAVKESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLADAAGLDELECLGELALSGTLRPVPGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVSH
LLELAAHFSGQERLRPYEANGLLRITPPYPDLSEVQGQTAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLMPPLD
EDEALQVAAIHSVAGRGPLTHWPQRPFRQPHHTASAPALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLE
GGEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRAKLSGPLLDRIDLHLTVSRESTSLAPSGP
STSSAELATQVAAARQRQLARQGCANAFLTLKKMHQYCALTPEDQAWLEKAGERLNLSLRALHRILKVARTLADLQQADN
IARPHLAEALQYRAGH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=423394 G4G71_RS04135 WP_169935538.1 898542..900032(-) (comM) [Pseudomonas multiresinivorans strain populi]
ATGTCCCTCGCCATCGTCCATAGCCGCGCCCAGGTCGGCGTGGAAGCGCCCGGCGTCACCGTCGAGGCGCACCTCGCCAA
CGGCCTGCCTTCACTGACCCTGGTCGGCCTGCCCGAAGGCGCCGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCAACGCCGGCTTCGATTTTCCCGCCCGCCGCATCACCTTGAATCTCGCCCCGGCCGACCTGCCGAAGGACGGCGGGCGT
TTCGACCTGGCCATTGCCCTGGGCATCCTCGCCGCCAGCGGCCAGTTGGCCGACGCCGCCGGGCTGGATGAACTGGAATG
CCTGGGCGAACTGGCGCTCTCCGGCACGCTGCGACCGGTCCCCGGTGTGCTGCCCGCCGCCCTGGCTGCCCGCGCCGCCG
GCCGCGCGCTGGTGGTGCCAAAGGAGAACGCCGAAGAAGCCAGCCTCGCCAGCGGCCTGACCGTCTACGCCGTGAGCCAT
CTGCTGGAACTGGCCGCGCACTTCAGCGGCCAGGAGCGCCTGCGTCCTTATGAGGCGAACGGTTTGTTGCGGATTACGCC
GCCCTATCCCGACCTGTCGGAAGTGCAAGGCCAGACTGCCGCCAAGCGAGCCCTGCTGGTAGCCGCCGCCGGCGCACACA
ACCTGTTATTCAGTGGGCCGCCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGATGCCGCCGCTGGAC
GAAGACGAAGCTCTGCAGGTTGCGGCGATCCATTCCGTGGCGGGGCGCGGGCCGCTGACCCACTGGCCGCAGCGCCCATT
CCGACAGCCGCACCACACCGCTTCCGCGCCGGCGCTGGTCGGAGGTGGCAGCCGCCCGCAACCGGGCGAGATCACCCTGG
CGCACGAGGGTGTGTTGTTCCTGGATGAATTGCCGGAGTTCGATCGCAAGGTCCTGGAGGTTCTCCGCGAACCGCTGGAA
GGGGGAGAAATAGTTATTGCCCGCGCCAACGGTCGTGTGCGCTTCCCGGCACGCTTCCAACTGGTGGCAGCGATGAACCC
CTGCCCCTGTGGCTATCTCGGCGACCCCAGCGGCCGCTGCCGCTGTTCGCCCGAGCAGATCCAGCGCTACCGCGCCAAGC
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGCACCTCACCGTCAGCCGGGAAAGCACCAGCCTCGCGCCCAGCGGCCCG
AGCACCAGCAGCGCGGAACTGGCCACTCAGGTCGCCGCCGCCCGCCAGCGCCAGCTCGCCCGCCAGGGCTGCGCGAACGC
CTTTCTCACGCTGAAGAAGATGCACCAATATTGTGCATTGACCCCAGAAGACCAGGCCTGGCTGGAGAAGGCCGGCGAGC
GCCTGAACCTGTCACTGCGCGCCCTGCACCGGATTCTCAAGGTCGCTCGTACCCTCGCCGACCTGCAGCAGGCTGACAAC
ATCGCCCGCCCGCACCTGGCCGAAGCGCTGCAATACCGCGCGGGGCATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.064

100

0.569
  comM Vibrio cholerae strain A1552

55.936

100

0.56
  comM Glaesserella parasuis strain SC1401

54.96

100

0.558
  comM Vibrio campbellii strain DS40M4

54.93

100

0.55
  comM Legionella pneumophila str. Paris

48.617

100

0.496
  comM Legionella pneumophila strain ERS1305867

48.617

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.619

100

0.484

Multiple sequence alignment