Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3257_RS04725 Genome accession   NZ_CP048832
Coordinates   1069063..1070583 (-) Length   506 a.a.
NCBI ID   WP_176374664.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064063..1075583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS04715 (G3257_04700) - 1067928..1068272 (-) 345 WP_034749443.1 DUF1840 domain-containing protein -
  G3257_RS04720 (G3257_04705) - 1068453..1068998 (-) 546 WP_244965380.1 hypothetical protein -
  G3257_RS04725 (G3257_04710) comM 1069063..1070583 (-) 1521 WP_176374664.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G3257_RS04730 (G3257_04715) - 1070694..1070942 (-) 249 WP_034749434.1 accessory factor UbiK family protein -
  G3257_RS04735 (G3257_04720) - 1071213..1071980 (+) 768 WP_034784677.1 TorF family putative porin -
  G3257_RS04740 (G3257_04725) - 1071992..1072330 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  G3257_RS04745 (G3257_04730) amt 1072342..1073877 (+) 1536 WP_034784678.1 ammonium transporter -
  G3257_RS04750 (G3257_04735) gshA 1074082..1075380 (+) 1299 WP_070254361.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54540.49 Da        Isoelectric Point: 8.5085

>NTDB_id=423371 G3257_RS04725 WP_176374664.1 1069063..1070583(-) (comM) [Janthinobacterium lividum strain EIF1]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRNQSGAPRAFILPQANADEAALVGDACIYP
AHSLLEVCAHFAAHTSHTALQRHQPVLAAHAFPYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHNRLSGPLLDRIDLQIEVAAMPPAA
LGRQAGAGECTQRIATRVAAAYALQLARQGKSNQRLSNTEIEQHCRLETHGEQLLHGAMTRLHWSARTYHRVLRVARSIA
DLGGSPAIAQPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=423371 G3257_RS04725 WP_176374664.1 1069063..1070583(-) (comM) [Janthinobacterium lividum strain EIF1]
ATGAGCCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
TGGCTTGCCTTCGTTTACGATAGTCGGCCTGCCGGATACGGAAGTGAAGGAGTCGCGCGACCGCGTGCGTGCCGCGTTGC
AAAACTGCGGCTTCGAGATGCCAGCGCGGCGCATCACGGCCAACCTGGCGCCGGCAGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATTGCACTGGGCATCCTGGCCGCCTCCGGCCAATTGCCGGGCGATCAATTACATCACTATGAATTCGC
GGGCGAACTGTCGCTCTCAGGCCAGTTGCGTCCCATCCGCGGCGCCCTGGCCATGACCTTTGCCATGCAACGCAACCAGT
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCGAACGCGGACGAGGCCGCTCTCGTCGGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCATACCAGCCATACCGCCCTGCAACGCCACCAGCCCGTGCT
GGCAGCGCACGCTTTTCCGTACCCCGACTTTGCCGACGTGCAGGGGCAGCAGCAGGCGCGGCGGGCACTGGAAGTGGCGG
CAGCGGGCGGCCATAATGTCTTGATGGTAGGGCCGCCAGGCGCAGGCAAGACCATGCTGGCCAGCCGCTTTCCCGGCGTG
CTGCCGCCCATGAGCGATGAAGAAGCGCTGGAATCGGCTGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGGCGGCCCTATCGCGCCCCGCACCAGACAGCATCCGGCGTGGCACTGGTGGGTGGCGGCAACGTGCCGCGCCCGG
GAGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGATGAAATTGCCGAATTCCAGCGGCGGGTACTCGATGTGCTG
CGCCAGCCCATGGAATCGGGCGTGATCAGCATTTCACGCGCGGCTCGCCAGGCCGAGTTTCCTGCCCGCTTTCAACTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGCCACGCTTCCGGCCGTTGCCGCTGTACGCCAGACGCCGTGCTGC
GCTATCACAATCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAGATAGAAGTGGCCGCCATGCCGCCGGCCGCG
CTGGGCCGGCAGGCCGGTGCCGGAGAATGCACGCAGCGGATCGCCACGCGGGTAGCGGCAGCCTATGCCTTGCAGCTGGC
GCGCCAGGGAAAATCAAACCAGCGGCTGAGCAACACGGAAATAGAGCAGCATTGTCGCCTTGAAACGCATGGCGAACAGT
TGCTGCATGGCGCCATGACGCGTCTGCACTGGTCCGCGCGCACCTATCACCGGGTACTGCGCGTGGCGCGCAGCATCGCG
GACCTGGGGGGCAGCCCGGCCATCGCGCAGCCACATGTTGCCGAAGCGATCCAGTACCGGCGCGTACTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.207

100

0.547
  comM Vibrio cholerae strain A1552

53.137

100

0.536
  comM Glaesserella parasuis strain SC1401

52.756

100

0.53
  comM Haemophilus influenzae Rd KW20

50.588

100

0.51
  comM Legionella pneumophila str. Paris

48.728

100

0.492
  comM Legionella pneumophila strain ERS1305867

48.728

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.597

100

0.449

Multiple sequence alignment