Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BAINH2_RS12905 | Genome accession | NZ_CP061852 |
| Coordinates | 2678982..2679986 (-) | Length | 334 a.a. |
| NCBI ID | WP_007408185.1 | Uniprot ID | A7Z768 |
| Organism | Bacillus amyloliquefaciens strain INH2-4b | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2673982..2684986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAINH2_RS12875 (BAINH2_12875) | - | 2675010..2675666 (-) | 657 | WP_053573159.1 | DUF421 domain-containing protein | - |
| BAINH2_RS12880 (BAINH2_12880) | - | 2675833..2676219 (+) | 387 | WP_003152697.1 | TIGR04086 family membrane protein | - |
| BAINH2_RS12885 (BAINH2_12885) | yajC | 2676271..2676531 (-) | 261 | WP_003152695.1 | preprotein translocase subunit YajC | - |
| BAINH2_RS12890 (BAINH2_12890) | tgt | 2676562..2677707 (-) | 1146 | WP_007408186.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| BAINH2_RS12895 (BAINH2_12895) | queA | 2677735..2678763 (-) | 1029 | WP_017418236.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BAINH2_RS12900 (BAINH2_12900) | - | 2678789..2678989 (-) | 201 | WP_003152687.1 | DUF2905 domain-containing protein | - |
| BAINH2_RS12905 (BAINH2_12905) | ruvB | 2678982..2679986 (-) | 1005 | WP_007408185.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BAINH2_RS12910 (BAINH2_12910) | ruvA | 2679997..2680602 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BAINH2_RS12915 (BAINH2_12915) | - | 2680737..2681246 (-) | 510 | WP_012118093.1 | intercompartmental signaling factor BofC | - |
| BAINH2_RS19985 | - | 2681379..2681498 (-) | 120 | WP_007612850.1 | hypothetical protein | - |
| BAINH2_RS12925 (BAINH2_12925) | - | 2681632..2682225 (-) | 594 | WP_014721606.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| BAINH2_RS12930 (BAINH2_12930) | safA | 2682373..2683563 (-) | 1191 | WP_007612852.1 | SafA/ExsA family spore coat assembly protein | - |
| BAINH2_RS12935 (BAINH2_12935) | nadA | 2683690..2684793 (-) | 1104 | WP_053573158.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37224.57 Da Isoelectric Point: 4.9033
>NTDB_id=423217 BAINH2_RS12905 WP_007408185.1 2678982..2679986(-) (ruvB) [Bacillus amyloliquefaciens strain INH2-4b]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
Nucleotide
Download Length: 1005 bp
>NTDB_id=423217 BAINH2_RS12905 WP_007408185.1 2678982..2679986(-) (ruvB) [Bacillus amyloliquefaciens strain INH2-4b]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCAAAAATGAGGCAGGAGACACTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCTCCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGGGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCACATTGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGAGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCAAAAATGAGGCAGGAGACACTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCTCCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGGGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCACATTGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGAGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
92.216 |
100 |
0.922 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.744 |
98.204 |
0.518 |