Detailed information NTG0423218

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BAINH2_RS12910
• Genome accession: NZ_CP061852
• Coordinates: 2679997..2680602 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain INH2-4b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2674997..2685602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAINH2_RS12875 (BAINH2_12875)	-	2675010..2675666 (-)	657	WP_053573159.1	DUF421 domain-containing protein	-
BAINH2_RS12880 (BAINH2_12880)	-	2675833..2676219 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
BAINH2_RS12885 (BAINH2_12885)	yajC	2676271..2676531 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
BAINH2_RS12890 (BAINH2_12890)	tgt	2676562..2677707 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
BAINH2_RS12895 (BAINH2_12895)	queA	2677735..2678763 (-)	1029	WP_017418236.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BAINH2_RS12900 (BAINH2_12900)	-	2678789..2678989 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
BAINH2_RS12905 (BAINH2_12905)	ruvB	2678982..2679986 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BAINH2_RS12910 (BAINH2_12910)	ruvA	2679997..2680602 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
BAINH2_RS12915 (BAINH2_12915)	-	2680737..2681246 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
BAINH2_RS19985	-	2681379..2681498 (-)	120	WP_007612850.1	hypothetical protein	-
BAINH2_RS12925 (BAINH2_12925)	-	2681632..2682225 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
BAINH2_RS12930 (BAINH2_12930)	safA	2682373..2683563 (-)	1191	WP_007612852.1	SafA/ExsA family spore coat assembly protein	-
BAINH2_RS12935 (BAINH2_12935)	nadA	2683690..2684793 (-)	1104	WP_053573158.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=423218 BAINH2_RS12910 WP_003152683.1 2679997..2680602(-) (ruvA) [Bacillus amyloliquefaciens strain INH2-4b]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=423218 BAINH2_RS12910 WP_003152683.1 2679997..2680602(-) (ruvA) [Bacillus amyloliquefaciens strain INH2-4b]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCT
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTTAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408