Detailed information
Bioinformatically predicted
Overview
| Name | comA/nlmT | Type | Regulator |
| Locus tag | LRC_RS12050 | Genome accession | NC_015975 |
| Coordinates | 1758632..1758754 (+) | Length | 40 a.a. |
| NCBI ID | WP_338034078.1 | Uniprot ID | - |
| Organism | Ligilactobacillus ruminis ATCC 27782 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1753632..1763754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRC_RS08800 (LRC_16980) | - | 1754444..1755628 (-) | 1185 | WP_014074083.1 | pyridoxal phosphate-dependent aminotransferase | - |
| LRC_RS08805 (LRC_16990) | - | 1755659..1756318 (-) | 660 | WP_014074084.1 | methionine ABC transporter permease | - |
| LRC_RS08810 (LRC_17000) | - | 1756318..1757334 (-) | 1017 | WP_014074085.1 | methionine ABC transporter ATP-binding protein | - |
| LRC_RS08815 (LRC_17010) | - | 1757364..1758197 (-) | 834 | WP_014074086.1 | MetQ/NlpA family ABC transporter substrate-binding protein | - |
| LRC_RS12050 | comA/nlmT | 1758632..1758754 (+) | 123 | WP_338034078.1 | ABC transporter transmembrane domain-containing protein | Regulator |
| LRC_RS08820 (LRC_17030) | - | 1759522..1759809 (-) | 288 | WP_014074088.1 | hypothetical protein | - |
| LRC_RS08825 (LRC_17040) | - | 1759826..1760305 (-) | 480 | WP_014074089.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| LRC_RS08830 (LRC_17050) | - | 1760328..1760507 (-) | 180 | WP_014074090.1 | leucocin A/sakacin P family class II bacteriocin | - |
| LRC_RS08835 | - | 1760736..1760933 (+) | 198 | WP_041820139.1 | bacteriocin-like protein | - |
| LRC_RS12055 | - | 1761559..1762191 (+) | 633 | WP_241531279.1 | GHKL domain-containing protein | - |
| LRC_RS08845 (LRC_17070) | - | 1762196..1762960 (+) | 765 | WP_014074092.1 | LytR/AlgR family response regulator transcription factor | - |
Sequence
Protein
Download Length: 40 a.a. Molecular weight: 4646.39 Da Isoelectric Point: 6.1534
>NTDB_id=42310 LRC_RS12050 WP_338034078.1 1758632..1758754(+) (comA/nlmT) [Ligilactobacillus ruminis ATCC 27782]
MKYWGYIIKLPMSFFETRKTGEITSKFSDANTLIEVLGET
MKYWGYIIKLPMSFFETRKTGEITSKFSDANTLIEVLGET
Nucleotide
Download Length: 123 bp
>NTDB_id=42310 LRC_RS12050 WP_338034078.1 1758632..1758754(+) (comA/nlmT) [Ligilactobacillus ruminis ATCC 27782]
TTGAAATATTGGGGGTACATAATCAAATTGCCAATGTCTTTTTTTGAAACAAGAAAAACAGGCGAAATTACTTCAAAATT
TTCTGATGCAAATACTCTTATAGAGGTACTGGGGGAAACTTAA
TTGAAATATTGGGGGTACATAATCAAATTGCCAATGTCTTTTTTTGAAACAAGAAAAACAGGCGAAATTACTTCAAAATT
TTCTGATGCAAATACTCTTATAGAGGTACTGGGGGAAACTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA/nlmT | Streptococcus mutans UA159 |
55 |
100 |
0.55 |
| comA | Streptococcus pneumoniae TIGR4 |
52.5 |
100 |
0.525 |
| comA | Streptococcus mitis SK321 |
52.5 |
100 |
0.525 |
| comA | Streptococcus pneumoniae Rx1 |
52.5 |
100 |
0.525 |
| comA | Streptococcus mitis NCTC 12261 |
52.5 |
100 |
0.525 |
| comA | Streptococcus pneumoniae R6 |
52.5 |
100 |
0.525 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
52.5 |
100 |
0.525 |
| comA | Streptococcus pneumoniae D39 |
52.5 |
100 |
0.525 |